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Entry version 69 (12 Aug 2020)
Sequence version 1 (05 Feb 2008)
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Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_65498

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionChromatin regulatorARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Predicted proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:PHYPADRAFT_65498Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhyscomitrella patens subsp. patens (Moss)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3218 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3218.PP1S6_392V6.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini617 – 689HSAInterPro annotationAdd BLAST73
Domaini1158 – 1209Myb-likeInterPro annotationAdd BLAST52

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni303 – 322DisorderedSequence analysisAdd BLAST20
Regioni332 – 360DisorderedSequence analysisAdd BLAST29
Regioni431 – 451DisorderedSequence analysisAdd BLAST21
Regioni847 – 873DisorderedSequence analysisAdd BLAST27
Regioni922 – 977DisorderedSequence analysisAdd BLAST56
Regioni991 – 1024DisorderedSequence analysisAdd BLAST34
Regioni1072 – 1120DisorderedSequence analysisAdd BLAST49
Regioni1201 – 1247DisorderedSequence analysisAdd BLAST47
Regioni1288 – 1368DisorderedSequence analysisAdd BLAST81
Regioni1581 – 1632DisorderedSequence analysisAdd BLAST52
Regioni1706 – 1813DisorderedSequence analysisAdd BLAST108
Regioni1826 – 1949DisorderedSequence analysisAdd BLAST124
Regioni2016 – 2052DisorderedSequence analysisAdd BLAST37
Regioni2108 – 2134DisorderedSequence analysisAdd BLAST27
Regioni2184 – 2225DisorderedSequence analysisAdd BLAST42
Regioni2268 – 2319DisorderedSequence analysisAdd BLAST52

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi922 – 972PolarSequence analysisAdd BLAST51
Compositional biasi1106 – 1120PolarSequence analysisAdd BLAST15
Compositional biasi1201 – 1217PolyampholyteSequence analysisAdd BLAST17
Compositional biasi1304 – 1318PolarSequence analysisAdd BLAST15
Compositional biasi1584 – 1632PolarSequence analysisAdd BLAST49
Compositional biasi1706 – 1781PolarSequence analysisAdd BLAST76
Compositional biasi1797 – 1813PolarSequence analysisAdd BLAST17
Compositional biasi1827 – 1841PolarSequence analysisAdd BLAST15
Compositional biasi1860 – 1941PolarSequence analysisAdd BLAST82
Compositional biasi2028 – 2052PolarSequence analysisAdd BLAST25
Compositional biasi2195 – 2225PolarSequence analysisAdd BLAST31
Compositional biasi2268 – 2298PolarSequence analysisAdd BLAST31

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QSR0, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_006910_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A9RFP9

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00167, SANT, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014012, HSA_dom
IPR017877, Myb-like_dom
IPR001005, SANT/Myb

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07529, HSA, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00573, HSA, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51204, HSA, 1 hit
PS50090, MYB_LIKE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A9RFP9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIIELGPGLA PGFEYSVNAE PGPMGAGAGA AATIEDTESS PRCAAIEKAQ
60 70 80 90 100
AELSFGIDES SVCILDWFRR DLAVREERRR ELEFLEKGGE ILDFKFGEVL
110 120 130 140 150
SLDFSAFSPT EPPVHPASSL KSEEEADVVV NGDLIKLSEG LVGAGAVEEI
160 170 180 190 200
NDVLVSSVPV VEEDGVECCE RLGSLDASIG DPTKPLNETP LELDVAGGNG
210 220 230 240 250
ILEKPEGAVH LNSDSALSLE ERNGHTLPEE VERVAGSDRE VVELEGTVTS
260 270 280 290 300
CNLEDEAMVE MSYQVLPHQS SHALSRKWNG LTGSQEYEPV NELISRCGPV
310 320 330 340 350
LEQHASEPSP RDRASVPSGK AIQSFDVRVD SDSSSLACEG RPDELADRSK
360 370 380 390 400
THEQPVAVGE GLGSGASAVQ VEVAAAEVVA KNPTGIVEDD VGTVEQATEN
410 420 430 440 450
SDRVDIVLSS SGADTGRVSD AAGISREPLE NVPKKHSSDV LSESVADGSS
460 470 480 490 500
GASVHRDARI AKKVASRGGS YLKLAYREKA GVDVEMGNGH HLRLKSDEGV
510 520 530 540 550
AGERAKQFPT EAEPGVHETN GADSQELRTG AQAGATVGGV PRLVGRPGSI
560 570 580 590 600
SGAPNCKYPG VALPSEKEQD SKVQVEGNRH SVELREKLAT KAREDFILEK
610 620 630 640 650
AEHLKAKRKL IDERRTLKKC AEPSRRKSHW DFVLEEMKWM ANDFWQERTW
660 670 680 690 700
KRYQAAHVCL EIAMKKGEVE FLAAGLIREQ RRVSSILARA VTDFWHRAEM
710 720 730 740 750
AVTKAKSDGK SIKEQLKKRT SDSEFVPMDV DCPVTKETSE KSVRVEEAGK
760 770 780 790 800
EQTSEVLKYA VQLLKEMGSA RIGQAEAPST PERYQENHSI LEQVREVHVP
810 820 830 840 850
LSYKVPVGAM EAYRAAVEAE HARSEEEYEK RRTVAIAEAE ALAAADAAED
860 870 880 890 900
ASAGGDASYG EFSNDGGSQD DEPAMLMNER SRISKKKRKK IIKTGSIGLR
910 920 930 940 950
SEGSGLQGLP YRTLGAVSSE LGMPSTPVTG KRSITVGLGP NSLPGSTSVK
960 970 980 990 1000
RARSSATNLR SRGTQPGTSP GASGLGLQKG FEFQSHQDDG LEMLDDSSQG
1010 1020 1030 1040 1050
DVFSDTPSSK VVGGDGKPKK KKTKTKSYVG LTSFDGGLVP GTSVKDLDGV
1060 1070 1080 1090 1100
GQEPRHEQLK RKADMHCVSI GGSDGGLDTP GASGSPGISV QQIPKKHKSV
1110 1120 1130 1140 1150
RQGEANPEAA LTSGSHSGQL VSSVVGSNKL SRQTSMRDSH RRVRPKVPLG
1160 1170 1180 1190 1200
TAMGVGIPWS AGEDQAILAL VHDLGPNWEL VSDVLSSNSQ LKGICRKPQQ
1210 1220 1230 1240 1250
CKERHKALTE RGGTEGLENA EDLSSSQPQA PKGIVRGPRG QSAAEEDTLK
1260 1270 1280 1290 1300
HFEQIVVIVQ KYRARKIPGD IKDQKVLQAS HPSHGIAISQ FCSGSGGPPN
1310 1320 1330 1340 1350
PVQLADRMTS TSDGGGHPYP AQGSQANVMG PQNAGSMSGL GMRPPAGGLP
1360 1370 1380 1390 1400
LPPALQGTNG SRLGGGPVSP AAMGAAAARL SVSWRRDAQR FTMNTMNLPS
1410 1420 1430 1440 1450
EDAARLQMPT NKLTEFNVRR AQQQAGPAAS GVPVLGGLPS SNGLPMMTSS
1460 1470 1480 1490 1500
TNGGMLAAPN RGGLSLPRPS LGGMGPPLVS NMIATGPNSR LLPSPNYVAS
1510 1520 1530 1540 1550
NMSRRVAQLM NAARRAKLGV SGRAEQFRRD VSLQSGCWWE NCPEEQRSQY
1560 1570 1580 1590 1600
FQQLQTLANQ GEAQAVSALS SLMGGGDMMN AADGSNQPFA QHQHSLQHQQ
1610 1620 1630 1640 1650
QEQHQQLQQH LHHMNNSSSK LQAQLQQHNQ QLPGTPQGYI SVPTRMKEQQ
1660 1670 1680 1690 1700
WQQHQQQHKQ RLLGGLPANS QVQHTVVPLQ PAVPIFPPQN LNSQSHVLLP
1710 1720 1730 1740 1750
PTHSSLQKHL MQQVSGPSQG AQVVGSLSLQ SSPASPSGSG QQNEPSAQMA
1760 1770 1780 1790 1800
QSGKSPQTKQ IPKQAQPTPQ QAVQQQGLRN GKGGNRGAML MHGVSPQTGP
1810 1820 1830 1840 1850
GQASTSTGNV NGQLQSEVGG QLQAGLRGVG QAQSQAPKAV SGPQAGSVPG
1860 1870 1880 1890 1900
GPQGGQGGQA HGVQLASVSS VVGQQKGSQQ VQQAAQGVMN KPQQGSPSLT
1910 1920 1930 1940 1950
GGQSSGQQVG SGATSSQQAV SAASSVAGTQ QPQQLHRRQV AQTAGASRRD
1960 1970 1980 1990 2000
MGLIERESIW GRNYLERPRE GAPAYIEAAN DAVKLFVPQA WLALSHVKRQ
2010 2020 2030 2040 2050
FVMTLKLTRL PARHPGSSVG MPVPGQLGKT GVQQTGHGSP SQMTSQTDPN
2060 2070 2080 2090 2100
SYQPVGSISV SASNPNLHGV GLTSAVNSST GEAQGTQWKA NQVLPHLPGG
2110 2120 2130 2140 2150
MYNLTRTSSP GSGPVPTTAS SGVQSNGNIG MSSLTSSGIQ DVGLGNMAQG
2160 2170 2180 2190 2200
VGVVQGVPNH KVGGLGMNGR GLTGSQVGVV GGQRNPLSGP VGGSSGIGAT
2210 2220 2230 2240 2250
PSSHVRHPTG SSLMASPTTS GSVGVSQGGT AMASYSGVSA ASGSAANGGQ
2260 2270 2280 2290 2300
SDKLEHVAMQ ARQGHGGYVA ASSSSSSLEA SSEVAGASGA SGATNSGNRI
2310
PGFGAVEVPP SGEAAAASS
Length:2,319
Mass (Da):243,029
Last modified:February 5, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6EF028007C2880D9
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DS544895 Genomic DNA Translation: EDQ82432.1

NCBI Reference Sequences

More...
RefSeqi
XP_001752928.1, XM_001752876.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS544895 Genomic DNA Translation: EDQ82432.1
RefSeqiXP_001752928.1, XM_001752876.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3218.PP1S6_392V6.1

Phylogenomic databases

eggNOGiENOG502QSR0, Eukaryota
HOGENOMiCLU_006910_0_0_1
InParanoidiA9RFP9

Family and domain databases

CDDicd00167, SANT, 1 hit
InterProiView protein in InterPro
IPR014012, HSA_dom
IPR017877, Myb-like_dom
IPR001005, SANT/Myb
PfamiView protein in Pfam
PF07529, HSA, 1 hit
SMARTiView protein in SMART
SM00573, HSA, 1 hit
PROSITEiView protein in PROSITE
PS51204, HSA, 1 hit
PS50090, MYB_LIKE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA9RFP9_PHYPA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A9RFP9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: August 12, 2020
This is version 69 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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