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Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_006G256200v3

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:POPTR_006G256200v3Imported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componenti: Chromosome 6

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei190 – 215HelicalSequence analysisAdd BLAST26

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 16Sequence analysisAdd BLAST16
ChainiPRO_501508686317 – 220Sequence analysisAdd BLAST204

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3694.POPTR_0006s27230.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 111LonginInterPro annotationAdd BLAST105
Domaini126 – 186V-SNARE coiled-coil homologyInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the synaptobrevin family.SAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0859 Eukaryota
COG5143 LUCA
HOGENOMiHOG000042711
KOiK08515
OMAiADCNVSY
OrthoDBiEOG09360NL1

Family and domain databases

InterProiView protein in InterPro
IPR011012 Longin-like_dom_sf
IPR010908 Longin_dom
IPR001388 Synaptobrevin
PfamiView protein in Pfam
PF13774 Longin, 1 hit
PF00957 Synaptobrevin, 1 hit
PRINTSiPR00219 SYNAPTOBREVN
SMARTiView protein in SMART
SM01270 Longin, 1 hit
SUPFAMiSSF64356 SSF64356, 1 hit
PROSITEiView protein in PROSITE
PS50859 LONGIN, 1 hit
PS00417 SYNAPTOBREVIN, 1 hit
PS50892 V_SNARE, 1 hit

Sequencei

Sequence statusi: Complete.

A9PGC9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAILYALVAR GSVVLAEFSS TATNASAIAR QILDKIPGND DSNVSYSQDR
60 70 80 90 100
YIFHVKRTDG LAVLCMADET AGRRIPFAFL EDIHQRFART YGRAVITAQA
110 120 130 140 150
YAMNDEFSRV LSQQMEYYTN DPNADRINRL KGEMSQVRNV MIENIDKVLE
160 170 180 190 200
RGDRLELLVD KTANMQGNTF RFRKQARRFS SAVWWRNVKL TVALILLLLV
210 220
IIYVVLAVVC HGVTLPTCRK
Length:220
Mass (Da):24,983
Last modified:February 5, 2008 - v1
Checksum:i0DFC2D0AD778AE20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF147419 mRNA Translation: ABK95432.1
CM009295 Genomic DNA Translation: PNT33763.1
RefSeqiXP_002308673.1, XM_002308637.2
UniGeneiPth.9380

Genome annotation databases

EnsemblPlantsiPOPTR_0006s27230.1; POPTR_0006s27230.1; POPTR_0006s27230
GeneIDi7468649
GrameneiPOPTR_0006s27230.1; POPTR_0006s27230.1; POPTR_0006s27230
KEGGipop:7468649

Similar proteinsi

Entry informationi

Entry nameiA9PGC9_POPTR
AccessioniPrimary (citable) accession number: A9PGC9
Entry historyiIntegrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: July 18, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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