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UniProtKB - A9LLI8 (RP6L3_ARATH)

Entry version 85 (25 May 2022)
Sequence version 1 (05 Feb 2008)
Previous versions | rss
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Protein

Protein RRP6-like 3

Gene

RRP6L3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein RRP6-like 31 Publication
Short name:
AtRRP6L31 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RRP6L31 Publication
Ordered Locus Names:At2g32415Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT2G32415

The Arabidopsis Information Resource

More...TAIRi		locus:504955936, AT2G32415

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cytoplasm

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004336321 – 892Protein RRP6-like 3Add BLAST892

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		A9LLI8

ProteomicsDB: a multi-organism proteome resource

More...ProteomicsDBi		228220 [A9LLI8-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		A9LLI8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		A9LLI8, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		3702.AT2G32415.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

AlphaFold Protein Structure Database

More...AlphaFoldDBi		A9LLI8

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		A9LLI8

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini119 – 2873'-5' exonucleaseSequence analysisAdd BLAST169
Domaini350 – 436HRDCPROSITE-ProRule annotationAdd BLAST87

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni785 – 811DisorderedSequence analysisAdd BLAST27

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG2206, Eukaryota
KOG4373, Eukaryota

Identification of Orthologs from Complete Genome Data

More...OMAi		CSAILET

Database of Orthologous Groups

More...OrthoDBi		692844at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		A9LLI8

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.150.80, 1 hit
3.30.420.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR002562, 3'-5'_exonuclease_dom
IPR010997, HRDC-like_sf
IPR002121, HRDC_dom
IPR044876, HRDC_dom_sf
IPR012337, RNaseH-like_sf
IPR036397, RNaseH_sf
IPR045092, Rrp6-like

The PANTHER Classification System

More...PANTHERi		PTHR12124, PTHR12124, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01612, DNA_pol_A_exo1, 1 hit
PF00570, HRDC, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00474, 35EXOc, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF47819, SSF47819, 1 hit
SSF53098, SSF53098, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: A9LLI8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <p><strong>What is the canonical sequence?</strong><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MELKEKAKVV ITVASLVAVT ILFVTEYRRR RQRRKQTSSL SSCYLHSELK 
        60         70         80         90        100
PQFGFKRVLA DNSYSEFKHL KLVDASSSSL EKPSNGHPYE TEITVLLENP 
       110        120        130        140        150
QIEFGFLRGE CSLEMSDSYV WVETESQLKE LAEILAKEQV FAVDTEQHSL 
       160        170        180        190        200
RSFLGFTALI QISTHEEDFL VDTIALHDVM SILRPVFSDP NICKVFHGAD 
       210        220        230        240        250
NDVIWLQRDF HIYVVNMFDT AKACEVLSKP QRSLAYLLET VCGVATNKLL 
       260        270        280        290        300
QREDWRQRPL SEEMVRYART DAHYLLYIAD SLTTELKQLA TEDSSSPDDR 
       310        320        330        340        350
FHFLLEASRR SNMTCLQLYT KETEDFPGSA ASSSIIYRHL NGHGDKSNIS 
       360        370        380        390        400
LNAEELVRKL CAWRDLMGRI HDESTRYVLS DQAIVGLSCK QPTTTEEIYD 
       410        420        430        440        450
TIAHIDLATE SSPSLSSSVQ SPYPVICSHL DDIYKMILDK LAKLDDLLPV 
       460        470        480        490        500
VLKKCLGTNG TCPISVFNYS LLVNFKTKLS SHSAPKQNGH KNFKQQFTRK 
       510        520        530        540        550
ASRELFVKKF SCKAPVYHNC RIYANDGRLL CYCDKRKLEW YLNRGLAKLV 
       560        570        580        590        600
EENPPAIMLL FEPKGRPEDE GNDFYIQTKR NICVGCGEGK HYLRYRIIPS 
       610        620        630        640        650
CYRVHFPEHL KSHRSHDIVL LCVDCHEVAH AAAERYKKQI ATEFGIPLFV 
       660        670        680        690        700
RRVLDSKEAQ GTSSLVEDES TGDSEDAGVS PLHLRSAAMA LLRHGNRMPS 
       710        720        730        740        750
SRREELLQTV KMYYGGRDLS EEDLEKALLI GLSPHERRKL ERKKGVSFKH 
       760        770        780        790        800
SAEVAGMDKQ EDENNDGEAL ADFEKIMTVE RSTVVDDSGD GTSEGDGAKE 
       810        820        830        840        850
LNDTQCNGNT LHQQNSKLSL LGHGPHGKQI VEYLLREHGE DGVRDFCQRW 
       860        870        880        890 
RKVFVDAVHP RHLPGGWNVS HSGRRDFGEF SVYNPTKRLS TE
Length:892
Mass (Da):101,390
Last modified:February 5, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6EAB339F2E2E044A
GO
Isoform 2 (identifier: A9LLI8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     292-292: Missing.

Note: May be due to a competing acceptor splice site.Curated
Show »
Length:891
Mass (Da):101,261
Checksum:iD500042275C07242
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4ITQ7F4ITQ7_ARATH
Polynucleotidyl transferase, ribonu...
At2g32415, At2g32420
872Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAC69936 differs from that shown. Reason: Erroneous gene model prediction.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_057830292Missing in isoform 2. 1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
EU240664 mRNA Translation: ABX52081.1
AC005700 Genomic DNA Translation: AAC69936.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC08682.1
CP002685 Genomic DNA Translation: ANM61513.1

Protein sequence database of the Protein Information Resource

More...PIRi		H84732

NCBI Reference Sequences

More...RefSeqi		NP_001323729.1, NM_001336395.1 [A9LLI8-1]
NP_850189.5, NM_179858.5 [A9LLI8-2]

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2]
AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		817803

Gramene; a comparative resource for plants

More...Gramenei		AT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2]
AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT2G32415

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU240664 mRNA Translation: ABX52081.1
AC005700 Genomic DNA Translation: AAC69936.1 Sequence problems.
CP002685 Genomic DNA Translation: AEC08682.1
CP002685 Genomic DNA Translation: ANM61513.1
PIRiH84732
RefSeqiNP_001323729.1, NM_001336395.1 [A9LLI8-1]
NP_850189.5, NM_179858.5 [A9LLI8-2]

3D structure databases

AlphaFoldDBiA9LLI8
SMRiA9LLI8
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G32415.1

PTM databases

iPTMnetiA9LLI8

Proteomic databases

PaxDbiA9LLI8
ProteomicsDBi228220 [A9LLI8-1]

Genome annotation databases

EnsemblPlantsiAT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2]
AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1]
GeneIDi817803
GrameneiAT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2]
AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1]
KEGGiath:AT2G32415

Organism-specific databases

AraportiAT2G32415
TAIRilocus:504955936, AT2G32415

Phylogenomic databases

eggNOGiKOG2206, Eukaryota
KOG4373, Eukaryota
OMAiCSAILET
OrthoDBi692844at2759
PhylomeDBiA9LLI8

Miscellaneous databases

Protein Ontology

More...PROi		PR:A9LLI8

Gene expression databases

ExpressionAtlasiA9LLI8, baseline and differential

Family and domain databases

Gene3Di1.10.150.80, 1 hit
3.30.420.10, 1 hit
InterProiView protein in InterPro
IPR002562, 3'-5'_exonuclease_dom
IPR010997, HRDC-like_sf
IPR002121, HRDC_dom
IPR044876, HRDC_dom_sf
IPR012337, RNaseH-like_sf
IPR036397, RNaseH_sf
IPR045092, Rrp6-like
PANTHERiPTHR12124, PTHR12124, 1 hit
PfamiView protein in Pfam
PF01612, DNA_pol_A_exo1, 1 hit
PF00570, HRDC, 1 hit
SMARTiView protein in SMART
SM00474, 35EXOc, 1 hit
SUPFAMiSSF47819, SSF47819, 1 hit
SSF53098, SSF53098, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRP6L3_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A9LLI8
Secondary accession number(s): F4ITQ6, Q9ZV70
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 16, 2015
Last sequence update: February 5, 2008
Last modified: May 25, 2022
This is version 85 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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