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UniProtKB - A9LLI8 (RP6L3_ARATH)
Protein
Protein RRP6-like 3
Gene
RRP6L3
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
GO - Molecular functioni
- 3'-5'-exoribonuclease activity Source: GO_Central
- nucleotide binding Source: InterPro
- single-stranded RNA binding Source: GO_Central
GO - Biological processi
- exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: GO_Central
- histone mRNA catabolic process Source: GO_Central
- nuclear mRNA surveillance Source: GO_Central
- nuclear polyadenylation-dependent antisense transcript catabolic process Source: GO_Central
- nuclear polyadenylation-dependent CUT catabolic process Source: GO_Central
- nuclear polyadenylation-dependent rRNA catabolic process Source: GO_Central
- nuclear polyadenylation-dependent snoRNA catabolic process Source: GO_Central
- nuclear polyadenylation-dependent snRNA catabolic process Source: GO_Central
- nuclear polyadenylation-dependent tRNA catabolic process Source: GO_Central
- polyadenylation-dependent snoRNA 3'-end processing Source: GO_Central
Names & Taxonomyi
Protein namesi | Recommended name: Protein RRP6-like 31 PublicationShort name: AtRRP6L31 Publication |
Gene namesi | Name:RRP6L31 Publication Ordered Locus Names:At2g32415Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT2G32415 |
TAIRi | locus:504955936, AT2G32415 |
Subcellular locationi
Cytoplasm and Cytosol
- cytosol 1 Publication
Cytosol
- cytosol Source: UniProtKB-SubCell
Nucleus
- nuclear exosome (RNase complex) Source: GO_Central
- nucleolus Source: GO_Central
Other locations
- cytoplasm Source: TAIR
Keywords - Cellular componenti
CytoplasmPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000433632 | 1 – 892 | Protein RRP6-like 3Add BLAST | 892 |
Proteomic databases
PaxDbi | A9LLI8 |
ProteomicsDBi | 228220 [A9LLI8-1] |
PTM databases
iPTMneti | A9LLI8 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 119 – 287 | 3'-5' exonucleaseSequence analysisAdd BLAST | 169 | |
Domaini | 350 – 436 | HRDCPROSITE-ProRule annotationAdd BLAST | 87 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 785 – 811 | DisorderedSequence analysisAdd BLAST | 27 |
Phylogenomic databases
eggNOGi | KOG2206, Eukaryota KOG4373, Eukaryota |
OMAi | CSAILET |
OrthoDBi | 692844at2759 |
PhylomeDBi | A9LLI8 |
Family and domain databases
Gene3Di | 1.10.150.80, 1 hit 3.30.420.10, 1 hit |
InterProi | View protein in InterPro IPR002562, 3'-5'_exonuclease_dom IPR010997, HRDC-like_sf IPR002121, HRDC_dom IPR044876, HRDC_dom_sf IPR012337, RNaseH-like_sf IPR036397, RNaseH_sf IPR045092, Rrp6-like |
PANTHERi | PTHR12124, PTHR12124, 1 hit |
Pfami | View protein in Pfam PF01612, DNA_pol_A_exo1, 1 hit PF00570, HRDC, 1 hit |
SMARTi | View protein in SMART SM00474, 35EXOc, 1 hit |
SUPFAMi | SSF47819, SSF47819, 1 hit SSF53098, SSF53098, 1 hit |
s (2+)i Sequence
Sequence statusi: Complete.
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All
Isoform 1 (identifier: A9LLI8-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MELKEKAKVV ITVASLVAVT ILFVTEYRRR RQRRKQTSSL SSCYLHSELK
60 70 80 90 100
PQFGFKRVLA DNSYSEFKHL KLVDASSSSL EKPSNGHPYE TEITVLLENP
110 120 130 140 150
QIEFGFLRGE CSLEMSDSYV WVETESQLKE LAEILAKEQV FAVDTEQHSL
160 170 180 190 200
RSFLGFTALI QISTHEEDFL VDTIALHDVM SILRPVFSDP NICKVFHGAD
210 220 230 240 250
NDVIWLQRDF HIYVVNMFDT AKACEVLSKP QRSLAYLLET VCGVATNKLL
260 270 280 290 300
QREDWRQRPL SEEMVRYART DAHYLLYIAD SLTTELKQLA TEDSSSPDDR
310 320 330 340 350
FHFLLEASRR SNMTCLQLYT KETEDFPGSA ASSSIIYRHL NGHGDKSNIS
360 370 380 390 400
LNAEELVRKL CAWRDLMGRI HDESTRYVLS DQAIVGLSCK QPTTTEEIYD
410 420 430 440 450
TIAHIDLATE SSPSLSSSVQ SPYPVICSHL DDIYKMILDK LAKLDDLLPV
460 470 480 490 500
VLKKCLGTNG TCPISVFNYS LLVNFKTKLS SHSAPKQNGH KNFKQQFTRK
510 520 530 540 550
ASRELFVKKF SCKAPVYHNC RIYANDGRLL CYCDKRKLEW YLNRGLAKLV
560 570 580 590 600
EENPPAIMLL FEPKGRPEDE GNDFYIQTKR NICVGCGEGK HYLRYRIIPS
610 620 630 640 650
CYRVHFPEHL KSHRSHDIVL LCVDCHEVAH AAAERYKKQI ATEFGIPLFV
660 670 680 690 700
RRVLDSKEAQ GTSSLVEDES TGDSEDAGVS PLHLRSAAMA LLRHGNRMPS
710 720 730 740 750
SRREELLQTV KMYYGGRDLS EEDLEKALLI GLSPHERRKL ERKKGVSFKH
760 770 780 790 800
SAEVAGMDKQ EDENNDGEAL ADFEKIMTVE RSTVVDDSGD GTSEGDGAKE
810 820 830 840 850
LNDTQCNGNT LHQQNSKLSL LGHGPHGKQI VEYLLREHGE DGVRDFCQRW
860 870 880 890
RKVFVDAVHP RHLPGGWNVS HSGRRDFGEF SVYNPTKRLS TE
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketF4ITQ7 | F4ITQ7_ARATH | Polynucleotidyl transferase, ribonu... | At2g32415, At2g32420 | 872 | Annotation score: |
Sequence cautioni
The sequence AAC69936 differs from that shown. Reason: Erroneous gene model prediction.Curated
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_057830 | 292 | Missing in isoform 2. | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | EU240664 mRNA Translation: ABX52081.1 AC005700 Genomic DNA Translation: AAC69936.1 Sequence problems. CP002685 Genomic DNA Translation: AEC08682.1 CP002685 Genomic DNA Translation: ANM61513.1 |
PIRi | H84732 |
RefSeqi | NP_001323729.1, NM_001336395.1 [A9LLI8-1] NP_850189.5, NM_179858.5 [A9LLI8-2] |
Genome annotation databases
EnsemblPlantsi | AT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2] AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1] |
GeneIDi | 817803 |
Gramenei | AT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2] AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1] |
KEGGi | ath:AT2G32415 |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | EU240664 mRNA Translation: ABX52081.1 AC005700 Genomic DNA Translation: AAC69936.1 Sequence problems. CP002685 Genomic DNA Translation: AEC08682.1 CP002685 Genomic DNA Translation: ANM61513.1 |
PIRi | H84732 |
RefSeqi | NP_001323729.1, NM_001336395.1 [A9LLI8-1] NP_850189.5, NM_179858.5 [A9LLI8-2] |
3D structure databases
AlphaFoldDBi | A9LLI8 |
SMRi | A9LLI8 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 3702.AT2G32415.1 |
PTM databases
iPTMneti | A9LLI8 |
Proteomic databases
PaxDbi | A9LLI8 |
ProteomicsDBi | 228220 [A9LLI8-1] |
Genome annotation databases
EnsemblPlantsi | AT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2] AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1] |
GeneIDi | 817803 |
Gramenei | AT2G32415.1; AT2G32415.1; AT2G32415 [A9LLI8-2] AT2G32415.3; AT2G32415.3; AT2G32415 [A9LLI8-1] |
KEGGi | ath:AT2G32415 |
Organism-specific databases
Araporti | AT2G32415 |
TAIRi | locus:504955936, AT2G32415 |
Phylogenomic databases
eggNOGi | KOG2206, Eukaryota KOG4373, Eukaryota |
OMAi | CSAILET |
OrthoDBi | 692844at2759 |
PhylomeDBi | A9LLI8 |
Miscellaneous databases
PROi | PR:A9LLI8 |
Gene expression databases
ExpressionAtlasi | A9LLI8, baseline and differential |
Family and domain databases
Gene3Di | 1.10.150.80, 1 hit 3.30.420.10, 1 hit |
InterProi | View protein in InterPro IPR002562, 3'-5'_exonuclease_dom IPR010997, HRDC-like_sf IPR002121, HRDC_dom IPR044876, HRDC_dom_sf IPR012337, RNaseH-like_sf IPR036397, RNaseH_sf IPR045092, Rrp6-like |
PANTHERi | PTHR12124, PTHR12124, 1 hit |
Pfami | View protein in Pfam PF01612, DNA_pol_A_exo1, 1 hit PF00570, HRDC, 1 hit |
SMARTi | View protein in SMART SM00474, 35EXOc, 1 hit |
SUPFAMi | SSF47819, SSF47819, 1 hit SSF53098, SSF53098, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RP6L3_ARATH | |
Accessioni | A9LLI8Primary (citable) accession number: A9LLI8 Secondary accession number(s): F4ITQ6, Q9ZV70 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | September 16, 2015 |
Last sequence update: | February 5, 2008 | |
Last modified: | May 25, 2022 | |
This is version 85 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names