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Protein
Submitted name:

Sister chromatid cohesion protein PDS5 homolog B

Gene

PDS5B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Sister chromatid cohesion protein PDS5 homolog BImported
Gene namesi
Name:PDS5BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 13

Organism-specific databases

EuPathDBiHostDB:ENSG00000083642.18
HGNCiHGNC:20418 PDS5B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000083642

PTM / Processingi

Proteomic databases

EPDiA9IYQ1
MaxQBiA9IYQ1
PeptideAtlasiA9IYQ1
PRIDEiA9IYQ1

Expressioni

Gene expression databases

BgeeiENSG00000083642 Expressed in 221 organ(s), highest expression level in kidney
ExpressionAtlasiA9IYQ1 baseline and differential

Interactioni

Protein-protein interaction databases

IntActiA9IYQ1, 4 interactors

Structurei

3D structure databases

ProteinModelPortaliA9IYQ1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG1525 Eukaryota
ENOG410XQW7 LUCA
GeneTreeiENSGT00390000012488

Family and domain databases

InterProiView protein in InterPro
IPR039776 Pds5
PANTHERiPTHR12663 PTHR12663, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A9IYQ1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
IKQTKDAQGP DDAKMNEKLY TVCDVAMNII MSKSTTYSLE SPKDPVLPAR
60 70 80 90 100
FFTQPDKNFS NTKNYLPPEM KSFFTPGKPK TTNVLGAVNK PLSSAGKQSQ
110 120 130 140 150
TKSSRMETVS NASSSSNPSS PGRIKGRLDS SEMDHSENED YTMSSPLPGK
160 170 180 190 200
KSDKRDDSDL SELEKPRGRK KTPVTEQEEK LGMDDLTKLV QEQKPKGSQR
210 220 230 240 250
SRKRGHTASE SDEQQWPEEK RLKEDILENE DEQNSPPKKG KRGRPPKPLG
260 270 280 290 300
GGTPKEEPTM KTSKKGSKKK SGPPAPEEEE EEERQSGNTE QKSKSKQHRV

SR
Length:302
Mass (Da):33,692
Last modified:February 5, 2008 - v1
Checksum:iBC46A1BC435FE6C7
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9NTI5PDS5B_HUMAN
Sister chromatid cohesion protein P...
PDS5B APRIN, AS3, KIAA0979
1,447Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei302Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL138820 Genomic DNA No translation available.
KF510402 Genomic DNA No translation available.
Z75889 Genomic DNA No translation available.
Z84467 Genomic DNA No translation available.
Z84572 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000447833; ENSP00000407005; ENSG00000083642
UCSCiuc058wgw.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL138820 Genomic DNA No translation available.
KF510402 Genomic DNA No translation available.
Z75889 Genomic DNA No translation available.
Z84467 Genomic DNA No translation available.
Z84572 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliA9IYQ1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA9IYQ1, 4 interactors

Proteomic databases

EPDiA9IYQ1
MaxQBiA9IYQ1
PeptideAtlasiA9IYQ1
PRIDEiA9IYQ1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000447833; ENSP00000407005; ENSG00000083642
UCSCiuc058wgw.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000083642.18
HGNCiHGNC:20418 PDS5B
OpenTargetsiENSG00000083642
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG1525 Eukaryota
ENOG410XQW7 LUCA
GeneTreeiENSGT00390000012488

Miscellaneous databases

ChiTaRSiPDS5B human

Gene expression databases

BgeeiENSG00000083642 Expressed in 221 organ(s), highest expression level in kidney
ExpressionAtlasiA9IYQ1 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR039776 Pds5
PANTHERiPTHR12663 PTHR12663, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA9IYQ1_HUMAN
AccessioniPrimary (citable) accession number: A9IYQ1
Entry historyiIntegrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: November 7, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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