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Protein
Submitted name:

Protein CBR-NHR-14

Gene

nhr-14

Organism
Caenorhabditis briggsae
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi17 – 92Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein CBR-NHR-14Imported
Gene namesi
Name:nhr-14Imported
Synonyms:Cbr-nhr-14Imported
ORF Names:CBG22776Imported, CBG_22776Imported
OrganismiCaenorhabditis briggsaeImported
Taxonomic identifieri6238 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000008549 Componenti: Chromosome X

Organism-specific databases

WormBaseiCBG22776a ; CBP05428 ; WBGene00041261 ; Cbr-nhr-14

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi6238.CBG22776

Structurei

3D structure databases

ProteinModelPortaliA8Y2V6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini17 – 92Nuclear receptorInterPro annotationAdd BLAST76
Domaini131 – 355NR LBDInterPro annotationAdd BLAST225

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG4215 Eukaryota
ENOG410XQT8 LUCA
HOGENOMiHOG000022323
InParanoidiA8Y2V6
OMAiNIDKDHR
OrthoDBiEOG091G0A89

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR035500 NHR_like_dom_sf
IPR000536 Nucl_hrmn_rcpt_lig-bd
IPR001723 Nuclear_hrmn_rcpt
IPR001628 Znf_hrmn_rcpt
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF00104 Hormone_recep, 1 hit
PF00105 zf-C4, 1 hit
PRINTSiPR00398 STRDHORMONER
PR00047 STROIDFINGER
SMARTiView protein in SMART
SM00430 HOLI, 1 hit
SM00399 ZnF_C4, 1 hit
SUPFAMiSSF48508 SSF48508, 1 hit
PROSITEiView protein in PROSITE
PS51843 NR_LBD, 1 hit
PS00031 NUCLEAR_REC_DBD_1, 1 hit
PS51030 NUCLEAR_REC_DBD_2, 1 hit

Sequencei

Sequence statusi: Complete.

A8Y2V6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFLMSTSLS ESTSTSADFC VVCGDKAIGK HYGAVACNGC KGFFRRSVWQ
60 70 80 90 100
NLQYTCRFNK QCNIDKDHRN ACRYCRFQKC LADGMKPEAI QNERDRIGST
110 120 130 140 150
KRRKRSGANS ENNSDSEGTP SPKIEVMGNS VSRKLIEMLL DIEHRLASNQ
160 170 180 190 200
SMNALLRDES ETKSSRQRAV NYLIGWTNML HPLPEVPLAD KLLLLKKFSS
210 220 230 240 250
AFTLLGTMQR SMALPHFVLP NDQVLSITCQ HPQELYDALT RIIDELLTPL
260 270 280 290 300
RRLRTDHAEF SCLKALLLLN PDVVGISSST RDKIRDARDQ LLKALFAYMS
310 320 330 340 350
NTQNSIEASL RVSSLLMIVP SLISVSSMIM EFPGLSDLFG LGDVMKRESS
360 370 380 390 400
SPKVETPPLE MAPMVHKLTP PPPVVTTSPS AMPQTNIMMN KDILSQIINN
410 420 430 440
PQLFPLLPIP QTASPPLSFM GQSEYASHHL QQMPVKVILS
Length:440
Mass (Da):49,130
Last modified:January 15, 2008 - v1
Checksum:i805ADD7A0AA847F4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE601156 Genomic DNA Translation: CAP39290.1
RefSeqiXP_002645520.1, XM_002645474.1

Genome annotation databases

EnsemblMetazoaiCBG22776a; CBG22776a; WBGene00041261
GeneIDi8587519
KEGGicbr:CBG22776

Similar proteinsi

Entry informationi

Entry nameiA8Y2V6_CAEBR
AccessioniPrimary (citable) accession number: A8Y2V6
Entry historyiIntegrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: January 15, 2008
Last modified: May 23, 2018
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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