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Protein

Transcription elongation factor SPT6 homolog

Gene

SPT6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Transcription elongation factor that enhances the transcription elongation by RNA polymerase II (RNAPII) (By similarity). Plays an important role in regulating embryo apical and basal patterning during early embryogenesis, partly through negative regulation of the transcription factors PHABULOSA and PHAVOLUTA.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • DNA binding Source: InterPro
  • histone binding Source: GO_Central
  • nucleosome binding Source: GO_Central
  • translation elongation factor activity Source: UniProtKB-KW

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionElongation factor
Biological processProtein biosynthesis, Transcription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Transcription elongation factor SPT6 homologCurated
Short name:
AtSPT61 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SPT61 Publication
Synonyms:GTB1Imported, SPT6L1 Publication
Ordered Locus Names:At1g65440Imported
ORF Names:T8F5.22Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G65440

The Arabidopsis Information Resource

More...
TAIRi
locus:2206330 AT1G65440

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Embryonic lethality leading to aborted seed development.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004375001 – 1647Transcription elongation factor SPT6 homologAdd BLAST1647

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A8MS85

PRoteomics IDEntifications database

More...
PRIDEi
A8MS85

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
A8MS85

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in shoot apical meristem, leaf primordia, vasculature of young leaves, inflorescence meristem, floral meristem, young floral organs, developing ovules and anthers.1 Publication

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

During embryo development, expressed throughout embryos at the globular, heart, torpedo and bent-cotyledon stages.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A8MS85 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts (via N-terminus) with IWS1.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT1G65440.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
A8MS85

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A8MS85

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1103 – 1174S1 motifPROSITE-ProRule annotationAdd BLAST72
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati1443 – 144411 Publication2
Repeati1452 – 145321 Publication2
Repeati1511 – 151231 Publication2
Repeati1522 – 152341 Publication2
Repeati1530 – 153151 Publication2
Repeati1547 – 154861 Publication2
Repeati1563 – 156471 Publication2
Repeati1574 – 157581 Publication2
Repeati1601 – 160291 Publication2
Repeati1615 – 1616101 Publication2
Repeati1630 – 1631111 Publication2
Repeati1646 – 1647121 Publication2

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1443 – 164712 X 2 AA repeats of [WG]-[GW] repeatsCuratedAdd BLAST205

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi8 – 190Asp-richPROSITE-ProRule annotationAdd BLAST183
Compositional biasi10 – 74Glu-richPROSITE-ProRule annotationAdd BLAST65
Compositional biasi77 – 114Lys-richPROSITE-ProRule annotationAdd BLAST38

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the SPT6 family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1856 Eukaryota
COG2183 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000241511

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A8MS85

KEGG Orthology (KO)

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KOi
K11292

Database of Orthologous Groups

More...
OrthoDBi
EOG0936008H

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A8MS85

Family and domain databases

Conserved Domains Database

More...
CDDi
cd09928 SH2_Cterm_SPT6_like, 1 hit
cd09918 SH2_Nterm_SPT6_like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.650, 1 hit
1.10.3500.10, 1 hit
3.30.420.140, 1 hit
3.30.505.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012340 NA-bd_OB-fold
IPR012337 RNaseH-like_sf
IPR010994 RuvA_2-like
IPR022967 S1_dom
IPR003029 S1_domain
IPR036860 SH2_dom_sf
IPR028083 Spt6_acidic_N_dom
IPR032706 Spt6_HHH
IPR035420 Spt6_SH2
IPR035018 Spt6_SH2_C
IPR035019 Spt6_SH2_N
IPR028231 Spt6_YqgF
IPR023323 Tex-like_dom_sf
IPR023319 Tex-like_HTH_dom_sf
IPR017072 TF_Spt6
IPR006641 YqgF/RNaseH-like_dom
IPR037027 YqgF/RNaseH-like_dom_sf

The PANTHER Classification System

More...
PANTHERi
PTHR10145 PTHR10145, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14635 HHH_7, 1 hit
PF14633 SH2_2, 1 hit
PF14632 SPT6_acidic, 1 hit
PF14639 YqgF, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF036947 Spt6, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00316 S1, 1 hit
SM00732 YqgFc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47781 SSF47781, 2 hits
SSF50249 SSF50249, 1 hit
SSF53098 SSF53098, 1 hit
SSF55550 SSF55550, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50126 S1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 1 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoform i produced by alternative splicing. AlignAdd to basket

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: A8MS85-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MARNAISDDE EDHELEDDDG EPVHGDPAEH DENDDEEDDD DVGNEYENDG
60 70 80 90 100
FIVNDEDEEE EEEEDEERKD SDEERQKKKK KRKKKDEGLD EDDYLLLQDN
110 120 130 140 150
NVKFKKRQYK RLKKAQREQG NGQGESSDDE FDSRGGTRRS AEDKIKDRLF
160 170 180 190 200
DDVDVDDPPD DVGDEEDLVV EEDVVGSEDE MADFIVDEDD EHGPPKRGNS
210 220 230 240 250
KKKKYRQGSD ITAMRDANEI FGDVDELLTI RKKGLASNQR MERRLEDEFE
260 270 280 290 300
PTVLSEKYMT GNDDEIRQLD IPERMQISEE STGSPPVDEI SIEEESNWIY
310 320 330 340 350
AQLASQLRES DGTFDGRGFS VNKDDIAKFL ELHHVQKLEI PFIAMYRKEQ
360 370 380 390 400
CRSLLDTGDF DGANQGKKPE TKWHKVFWMI HDLDKKWLLL RKRKMALHGY
410 420 430 440 450
YTKRYEEESR RVYDETRLNL NQYLFESVIK SLKVAETERE VDDVDSKFNL
460 470 480 490 500
HFPPGEIGVD EGQYKRPKRK SQYSICSKAG LWEVANKFGY SAEQLGLALS
510 520 530 540 550
LEKLVDELED AKETPEEMAK NFVCAMFENS LAVLKGARHM AAVEISCEPS
560 570 580 590 600
VKKYVRGIYM ENAVVSTSPT ADGNTVIDSF HQFSGIKWLR EKPLSKFEGA
610 620 630 640 650
QWLLIQKGEE EKLLQVTFKL PENYMNRLIS DCNEHYLSVG VSKYAQLWNE
660 670 680 690 700
QRKLILEDAL HAFLLPSMEK EARSLLTSRA KSRLLSEYGQ ALWNKVSAGP
710 720 730 740 750
YQKKEMDINL DEEAAPRVMA CCWGPGKPPN TFVMLDSSGE VLDVLYAGSL
760 770 780 790 800
TSRSQNVNDQ QRKKSDQDRV LKFMMDHQPH VVALGAVNLS CTRLKDDIYE
810 820 830 840 850
VIFQMVEEKP RDVGHGMDDL SIVYVDESLP RLYENSRISG EQLPQQSGNV
860 870 880 890 900
RRAVALGRYL QNPLAMVATL CGPGREILSW KLHPLENFLQ LDEKYGMVEQ
910 920 930 940 950
VMVDITNQVG IDINLAASHD WFFSPLQFIS GLGPRKAASL QRSLVRAGSI
960 970 980 990 1000
FVRKDLIMHG LGKKVFVNAA GFLRIRRSGL AASSSQFIDL LDDTRIHPES
1010 1020 1030 1040 1050
YSLAQELAKD IYDEDVRGDS NDDEDAIEMA IEHVRDRPAS LRKVVLDEYL
1060 1070 1080 1090 1100
ASKKRENKKE TYSNIIRELS CGFQDWRIPF KEPSPDEEFY MISGETEDTI
1110 1120 1130 1140 1150
AEGRIVQASV RRLQNGRAIC VLDSGLTGML MKEDFSDDGR DIVDLADQLK
1160 1170 1180 1190 1200
EGDILTCKIK SIQKQRYQVF LICKESEMRN NRHQHNQNVD AYYHEDRNSL
1210 1220 1230 1240 1250
QLVKEKARKE KELVRKHFKS RMIVHPRFQN ITADQATEYL SDKDFGESIV
1260 1270 1280 1290 1300
RPSSRGLNFL TLTLKIYDGV YAHKEIAEGG KENKDITSLQ CIGKTLTIGE
1310 1320 1330 1340 1350
DTFEDLDEVM DRYVDPLVSH LKTMLNYRKF RKGTKSEVDD LLRIEKGENP
1360 1370 1380 1390 1400
SRIVYCFGIS HEHPGTFILS YIRSTNPHHE YIGLYPKGFK FRKRMFEDID
1410 1420 1430 1440 1450
RLVAYFQRHI DDPLQESAPS IRSIAAKVPM RSPADHGSSG GSGWGSSQSE
1460 1470 1480 1490 1500
GGWKGNSDRS GSGRGGEYRN GGGRDGHPSG APRPYGGRGR GRGRGRRDDM
1510 1520 1530 1540 1550
NSDRQDGNGD WGNNDTGTAD GGWGNSGGGG WGSESAGKKT GGGSTGGWGS
1560 1570 1580 1590 1600
ESGGNKSDGA GSWGSGSGGG GSGGWGNDSG GKKSSEDGGF GSGSGGGGSD
1610 1620 1630 1640
WGNESGGKKS SADGGWGSES GGKKSDGEGG WGNEPSSRKS DGGGGGW
Note: A number of isoforms are produced. According to EST sequences.Curated
Length:1,647
Mass (Da):185,034
Last modified:December 4, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0280D05F681709CE
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4I9Y9F4I9Y9_ARATH
Transcription elongation factor spt...
GTB1 At1g65440, T8F5.22, T8F5_22
1,454Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F4I9Y7F4I9Y7_ARATH
Transcription elongation factor spt...
GTB1 At1g65440, T8F5.22, T8F5_22
1,642Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAC27151 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC004512 Genomic DNA Translation: AAC27151.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE34373.1
CP002684 Genomic DNA Translation: ANM59396.1
AK229565 mRNA Translation: BAF01417.1

Protein sequence database of the Protein Information Resource

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PIRi
T02367

NCBI Reference Sequences

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RefSeqi
NP_001321759.1, NM_001334206.1 [A8MS85-1]
NP_176723.3, NM_105218.5 [A8MS85-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
At.20510

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G65440.1; AT1G65440.1; AT1G65440 [A8MS85-1]
AT1G65440.4; AT1G65440.4; AT1G65440 [A8MS85-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
842855

Gramene; a comparative resource for plants

More...
Gramenei
AT1G65440.1; AT1G65440.1; AT1G65440 [A8MS85-1]
AT1G65440.4; AT1G65440.4; AT1G65440 [A8MS85-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G65440

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004512 Genomic DNA Translation: AAC27151.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE34373.1
CP002684 Genomic DNA Translation: ANM59396.1
AK229565 mRNA Translation: BAF01417.1
PIRiT02367
RefSeqiNP_001321759.1, NM_001334206.1 [A8MS85-1]
NP_176723.3, NM_105218.5 [A8MS85-1]
UniGeneiAt.20510

3D structure databases

ProteinModelPortaliA8MS85
SMRiA8MS85
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G65440.1

PTM databases

iPTMnetiA8MS85

Proteomic databases

PaxDbiA8MS85
PRIDEiA8MS85

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G65440.1; AT1G65440.1; AT1G65440 [A8MS85-1]
AT1G65440.4; AT1G65440.4; AT1G65440 [A8MS85-1]
GeneIDi842855
GrameneiAT1G65440.1; AT1G65440.1; AT1G65440 [A8MS85-1]
AT1G65440.4; AT1G65440.4; AT1G65440 [A8MS85-1]
KEGGiath:AT1G65440

Organism-specific databases

AraportiAT1G65440
TAIRilocus:2206330 AT1G65440

Phylogenomic databases

eggNOGiKOG1856 Eukaryota
COG2183 LUCA
HOGENOMiHOG000241511
InParanoidiA8MS85
KOiK11292
OrthoDBiEOG0936008H
PhylomeDBiA8MS85

Miscellaneous databases

Protein Ontology

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PROi
PR:A8MS85

Gene expression databases

ExpressionAtlasiA8MS85 baseline and differential

Family and domain databases

CDDicd09928 SH2_Cterm_SPT6_like, 1 hit
cd09918 SH2_Nterm_SPT6_like, 1 hit
Gene3Di1.10.10.650, 1 hit
1.10.3500.10, 1 hit
3.30.420.140, 1 hit
3.30.505.10, 2 hits
InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR012337 RNaseH-like_sf
IPR010994 RuvA_2-like
IPR022967 S1_dom
IPR003029 S1_domain
IPR036860 SH2_dom_sf
IPR028083 Spt6_acidic_N_dom
IPR032706 Spt6_HHH
IPR035420 Spt6_SH2
IPR035018 Spt6_SH2_C
IPR035019 Spt6_SH2_N
IPR028231 Spt6_YqgF
IPR023323 Tex-like_dom_sf
IPR023319 Tex-like_HTH_dom_sf
IPR017072 TF_Spt6
IPR006641 YqgF/RNaseH-like_dom
IPR037027 YqgF/RNaseH-like_dom_sf
PANTHERiPTHR10145 PTHR10145, 1 hit
PfamiView protein in Pfam
PF14635 HHH_7, 1 hit
PF14633 SH2_2, 1 hit
PF14632 SPT6_acidic, 1 hit
PF14639 YqgF, 1 hit
PIRSFiPIRSF036947 Spt6, 1 hit
SMARTiView protein in SMART
SM00316 S1, 1 hit
SM00732 YqgFc, 1 hit
SUPFAMiSSF47781 SSF47781, 2 hits
SSF50249 SSF50249, 1 hit
SSF53098 SSF53098, 1 hit
SSF55550 SSF55550, 2 hits
PROSITEiView protein in PROSITE
PS50126 S1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSPT61_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A8MS85
Secondary accession number(s): O80815, Q0WN83
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 5, 2016
Last sequence update: December 4, 2007
Last modified: December 5, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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