UniProtKB - A8JUY0 (A8JUY0_DROME)
Protein
Submitted name:
RNA-binding protein 4F, isoform D
Gene
Rnp4F
Organism
Drosophila melanogaster (Fruit fly)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: UniProtKB-UniRule
GO - Biological processi
- RNA processing Source: InterPro
Keywordsi
Molecular function | RNA-bindingPROSITE-ProRule annotationARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: RNA-binding protein 4F, isoform DImportedSubmitted name: RNA-binding protein 4F, isoform FImported |
Gene namesi | Name:Rnp4FImported Synonyms:4F-rnpImported, 4f-rnpImported, Dmel\CG3312Imported, RNP-4FImported, Rnp-4FImported, rnp-4fImported ORF Names:CG3312Imported, Dmel_CG3312Imported |
Organismi | Drosophila melanogaster (Fruit fly)Imported |
Taxonomic identifieri | 7227 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Holometabola › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora › |
Proteomesi |
|
Organism-specific databases
FlyBasei | FBgn0014024, Rnp4F |
Expressioni
Gene expression databases
Bgeei | FBgn0014024, Expressed in female gonad and 64 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 724 – 801 | RRMInterPro annotationAdd BLAST | 78 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 149 | DisorderedSequence analysisAdd BLAST | 149 | |
Regioni | 629 – 713 | DisorderedSequence analysisAdd BLAST | 85 | |
Regioni | 862 – 941 | DisorderedSequence analysisAdd BLAST | 80 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1 – 16 | PolyampholyteSequence analysisAdd BLAST | 16 | |
Compositional biasi | 17 – 32 | AcidicSequence analysisAdd BLAST | 16 | |
Compositional biasi | 51 – 66 | PolyampholyteSequence analysisAdd BLAST | 16 | |
Compositional biasi | 67 – 88 | PolarSequence analysisAdd BLAST | 22 | |
Compositional biasi | 127 – 149 | PolarSequence analysisAdd BLAST | 23 | |
Compositional biasi | 631 – 658 | PolarSequence analysisAdd BLAST | 28 |
Phylogenomic databases
HOGENOMi | CLU_361804_0_0_1 |
OMAi | LWAQVEY |
OrthoDBi | 867827at2759 |
Family and domain databases
Gene3Di | 1.25.40.10, 1 hit 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR003107, HAT IPR008669, LSM_interact IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF05391, Lsm_interact, 1 hit PF00076, RRM_1, 1 hit |
SMARTi | View protein in SMART SM00386, HAT, 3 hits SM00360, RRM, 1 hit |
SUPFAMi | SSF48452, SSF48452, 1 hit SSF54928, SSF54928, 1 hit |
PROSITEi | View protein in PROSITE PS50102, RRM, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
A8JUY0-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MDADKQLERQ LEKELDEMPA EDLDDDAYDE YDLIVIPDQG KGSPQQGHSE
60 70 80 90 100
SPQQEEEHKS EELRQRSRPT WPPSSAGGDM TTIELISSDD EPSVEETEGG
110 120 130 140 150
NAAGRGRARN DSSSSSDDVG VIEGSELESN SEVSSDSDSD SDNAGGGNQL
160 170 180 190 200
ERSYQELNAL PSKKFAQMVS LIGIAFKLND LEKIESSVLE LQNLATVPAH
210 220 230 240 250
VWLKYLKARL VVTQTDEERK AFEEQCAKAL GYYYSIPLSE YVVNYLVDQG
260 270 280 290 300
NVQNHVLWAK LLADYDVERP DFGDKLRSLI STITDENEAA AFVEMLQKHC
310 320 330 340 350
VTWTCNVEQR QMIKSVVDKF KQHLDETTRG WDWSEQHKAH VYDVETLSLD
360 370 380 390 400
DDLKNAVIRF IFERSVAKFP IVDVLWLSYI EFIQFEGVTV PENEDENEVT
410 420 430 440 450
AEMVAKRAKR LGKGFLRNTE LDLANRGVRS HPSVQLNHRF LDLMERSDFE
460 470 480 490 500
LAEVDEEIRL ILQRIVTDMD MTVELHLDYL AYRIRNTNAS DEQQVASLRA
510 520 530 540 550
AFNHAWEELT VLYGDQADTR YEVLQLWAQV EYTQLGSPDN GREIWRQIMG
560 570 580 590 600
YPGSSIRGLL WLNFAQMESE YNGGHGTRDV LRKALSQPVL ENGLMVQEFF
610 620 630 640 650
RRYERCYGTY ESIAACQALD LPVEYVKPRS RIKPNSQSAY PRQQKLKPRQ
660 670 680 690 700
QQQQTNREPL NREQRRRQAH EQQQQQQQQQ KHGIKKSRTE PSGGATSPPS
710 720 730 740 750
KVKGPANAEA KESNFKYSPN MEINKIFVRN LHPACSKEEL HELFSPFGTI
760 770 780 790 800
KDVRLVHKLN KQFKGIAYVE FEKPGEAQRA VAGRDGCLFK GMNISVAISN
810 820 830 840 850
PPPRGTSAVK PSVAPKRRVP TSLIPTTLVR QEVAAKKLRL LLPEPGDISS
860 870 880 890 900
TSASVDVAIK REANGEEQKG DVQERDEQKG EEQKGEEQKG EEPKGEEQKG
910 920 930 940
DDQIGEEQSG VEQKGDEKKE EEMPAAVPKS NDDFRKLFLK D
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketQ9W4D2 | RNP4F_DROME | RNA-binding protein 4F | Rnp4F 4f-rnp, CG3312 | 941 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE014298 Genomic DNA Translation: ABW09339.3 AE014298 Genomic DNA Translation: ABW09340.1 |
RefSeqi | NP_001096883.3, NM_001103413.3 NP_001096884.1, NM_001103414.3 NP_511047.2, NM_078492.4 NP_996353.1, NM_206630.3 |
Genome annotation databases
EnsemblMetazoai | FBtr0070752; FBpp0070720; FBgn0014024 FBtr0070753; FBpp0089396; FBgn0014024 FBtr0112876; FBpp0111789; FBgn0014024 FBtr0340477; FBpp0309418; FBgn0014024 |
GeneIDi | 31448 |
KEGGi | dme:Dmel_CG3312 |
UCSCi | CG3312-RC, d. melanogaster CG3312-RD, d. melanogaster |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AE014298 Genomic DNA Translation: ABW09339.3 AE014298 Genomic DNA Translation: ABW09340.1 |
RefSeqi | NP_001096883.3, NM_001103413.3 NP_001096884.1, NM_001103414.3 NP_511047.2, NM_078492.4 NP_996353.1, NM_206630.3 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
EnsemblMetazoai | FBtr0070752; FBpp0070720; FBgn0014024 FBtr0070753; FBpp0089396; FBgn0014024 FBtr0112876; FBpp0111789; FBgn0014024 FBtr0340477; FBpp0309418; FBgn0014024 |
GeneIDi | 31448 |
KEGGi | dme:Dmel_CG3312 |
UCSCi | CG3312-RC, d. melanogaster CG3312-RD, d. melanogaster |
Organism-specific databases
CTDi | 31448 |
FlyBasei | FBgn0014024, Rnp4F |
Phylogenomic databases
HOGENOMi | CLU_361804_0_0_1 |
OMAi | LWAQVEY |
OrthoDBi | 867827at2759 |
Miscellaneous databases
BioGRID-ORCSi | 31448, 1 hit in 1 CRISPR screen |
GenomeRNAii | 31448 |
Gene expression databases
Bgeei | FBgn0014024, Expressed in female gonad and 64 other tissues |
Family and domain databases
Gene3Di | 1.25.40.10, 1 hit 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR003107, HAT IPR008669, LSM_interact IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom IPR011990, TPR-like_helical_dom_sf |
Pfami | View protein in Pfam PF05391, Lsm_interact, 1 hit PF00076, RRM_1, 1 hit |
SMARTi | View protein in SMART SM00386, HAT, 3 hits SM00360, RRM, 1 hit |
SUPFAMi | SSF48452, SSF48452, 1 hit SSF54928, SSF54928, 1 hit |
PROSITEi | View protein in PROSITE PS50102, RRM, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A8JUY0_DROME | |
Accessioni | A8JUY0Primary (citable) accession number: A8JUY0 Secondary accession number(s): A8JUY2 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | December 4, 2007 |
Last sequence update: | December 4, 2007 | |
Last modified: | February 10, 2021 | |
This is version 104 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |