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Protein
Submitted name:

Transcription-coupled DNA repair protein

Gene

XAB2

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription-coupled DNA repair proteinImported
Gene namesi
Name:XAB2Imported
ORF Names:CHLREDRAFT_60319Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiA8JHA4
ProMEXiA8JHA4

Interactioni

Protein-protein interaction databases

STRINGi3055.EDO96712

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini414 – 485TPR_REGIONInterPro annotationAdd BLAST72
Domaini540 – 648TPR_REGIONInterPro annotationAdd BLAST109

Phylogenomic databases

eggNOGiKOG2047 Eukaryota
ENOG410XPD9 LUCA
InParanoidiA8JHA4
KOiK12867

Family and domain databases

Gene3Di1.25.40.10, 2 hits
InterProiView protein in InterPro
IPR003107 HAT
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
SMARTiView protein in SMART
SM00386 HAT, 12 hits
SUPFAMiSSF48452 SSF48452, 6 hits
PROSITEiView protein in PROSITE
PS50293 TPR_REGION, 2 hits

Sequencei

Sequence statusi: Fragment.

A8JHA4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALVATDAQK KAMEDLLPNQ EDLLYEEELA RNPYNLKMWI RYIHARADAV
60 70 80 90 100
PKRRYLLYER AVRALPGSYK LWHAYLTERR LAVRGLRPDD VAYEALNNTF
110 120 130 140 150
ERALVSMHKM PRVWLDYLQL LMDQRLVTRT RRTFDRALGS LPITQHDRVW
160 170 180 190 200
ALYLKFIHTP GIPVETAVRL YRRYLKLEPT HAEEYVAYLK AKNRWGEAAR
210 220 230 240 250
KLAELLNDDT FRSLEGKSKH QLWLELCDMI TKHPKEVEGM RVDAIIRGGI
260 270 280 290 300
RRFTDEVGRL WTSLADYYIR RGMFEKARDV YEEGLCSVIT VHDFSLIYDA
310 320 330 340 350
YTQFEESLLS ASMEQLAGDD EDEEGGKEKE GDDGTDFLLK DDGNDVDLRL
360 370 380 390 400
ARLEHLMNRR PELLSSVILR QNPHNVAEWH KRVKIFTGKP TKQILTYTEA
410 420 430 440 450
VRTVDPDKAI GKPFTLWCAF AKFYEHHGDV ANARIIFQKA TEARHKYVDD
460 470 480 490 500
LAHVWCEWAE MELRHSNFKR ALDVVTRAIT PTPRPARMTP EEERALPVAD
510 520 530 540 550
RVYRNLKLHL MHTDLEESLG TRESTCAAYD RILELRIATP QVILNYALFL
560 570 580 590 600
TEQKAFEDAF KVYERGIALF KYPHVKDIWT AYLAAFVERY GGKKLERARD
610 620 630 640 650
LYEQAIKDAP PTECKPLYLE YAKLEETYGL ARHAMDIYAR ALAAVPKAER
660 670 680 690 700
KSVLDLYVSR ASDFFGIAKV REIYESAIEA EPPHELSDDD VREVCMRYSA
710 720 730 740 750
LETKLGEIDR ARAIYVHGSA VSHPDRAADF WAAWRAFEVR HGNEDTFKEM
760 770 780 790 800
MRILRSVKVS FSHTQINSIV DAARLTSKAD AEAGAGGAVA GAKRPRDGGD
810 820 830 840 850
AMAELEAQAV AEMGLGAGAA AARARTLMKF WLVPSQRAPL PWLCRAANPE
860 870 880
EIDLDADADD DGAGAGGAED MDVAEKAVPA GVFGSL
Length:886
Mass (Da):101,093
Last modified:December 4, 2007 - v1
Checksum:iE0CB24CA3A92CA1F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei886Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496190 Genomic DNA Translation: EDO96712.1
RefSeqiXP_001702974.1, XM_001702922.1
UniGeneiCre.5414

Genome annotation databases

GeneIDi5728536
KEGGicre:CHLREDRAFT_60319

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496190 Genomic DNA Translation: EDO96712.1
RefSeqiXP_001702974.1, XM_001702922.1
UniGeneiCre.5414

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.EDO96712

Proteomic databases

PaxDbiA8JHA4
ProMEXiA8JHA4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5728536
KEGGicre:CHLREDRAFT_60319

Phylogenomic databases

eggNOGiKOG2047 Eukaryota
ENOG410XPD9 LUCA
InParanoidiA8JHA4
KOiK12867

Family and domain databases

Gene3Di1.25.40.10, 2 hits
InterProiView protein in InterPro
IPR003107 HAT
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
SMARTiView protein in SMART
SM00386 HAT, 12 hits
SUPFAMiSSF48452 SSF48452, 6 hits
PROSITEiView protein in PROSITE
PS50293 TPR_REGION, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA8JHA4_CHLRE
AccessioniPrimary (citable) accession number: A8JHA4
Entry historyiIntegrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: November 7, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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