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Protein

Centriole proteome protein 16

Gene

POC16

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Required for flagellum assembly and/or maintenance.1 Publication

GO - Molecular functioni

  • microtubule binding Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Centriole proteome protein 161 Publication
Gene namesi
Name:POC161 Publication
ORF Names:CHLREDRAFT_18900
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
Proteomesi
  • UP000006906 Componentsi: Chromosome 14, Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

Pathology & Biotechi

Disruption phenotypei

Mutants display shorter flagella and cannot swim.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004454321 – 2083Centriole proteome protein 16Add BLAST2083

Proteomic databases

PaxDbiA8JAN3

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3055.EDO99093

Structurei

3D structure databases

ProteinModelPortaliA8JAN3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati482 – 523WD 1Sequence analysisAdd BLAST42
Repeati526 – 569WD 2Sequence analysisAdd BLAST44
Repeati579 – 620WD 3Sequence analysisAdd BLAST42
Repeati689 – 726WD 4Sequence analysisAdd BLAST38
Repeati728 – 767WD 5Sequence analysisAdd BLAST40
Repeati770 – 809WD 6Sequence analysisAdd BLAST40
Repeati812 – 853WD 7Sequence analysisAdd BLAST42
Repeati856 – 895WD 8Sequence analysisAdd BLAST40
Repeati990 – 1029WD 9Sequence analysisAdd BLAST40
Repeati1041 – 1079WD 10Sequence analysisAdd BLAST39
Repeati1326 – 1365WD 11Sequence analysisAdd BLAST40
Repeati1403 – 1444WD 12Sequence analysisAdd BLAST42
Repeati1448 – 1486WD 13Sequence analysisAdd BLAST39
Repeati1497 – 1539WD 14Sequence analysisAdd BLAST43
Repeati1651 – 1691WD 15Sequence analysisAdd BLAST41
Repeati1736 – 1781WD 16Sequence analysisAdd BLAST46
Repeati1785 – 1824WD 17Sequence analysisAdd BLAST40
Repeati2035 – 2073WD 18Sequence analysisAdd BLAST39

Sequence similaritiesi

Belongs to the WD repeat WDR90/POC16 family.Curated

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiKOG0266 Eukaryota
KOG3213 Eukaryota
ENOG410XNWN LUCA
InParanoidiA8JAN3
OMAiFVGPSKY

Family and domain databases

Gene3Di2.130.10.10, 6 hits
InterProiView protein in InterPro
IPR007714 CFA20/WDR90/C3orf67
IPR011047 Quinoprotein_ADH-like_supfam
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
IPR030466 WDR90
PANTHERiPTHR13720:SF24 PTHR13720:SF24, 1 hit
PfamiView protein in Pfam
PF05018 DUF667, 1 hit
PF00400 WD40, 4 hits
SMARTiView protein in SMART
SM00320 WD40, 16 hits
SUPFAMiSSF50978 SSF50978, 2 hits
SSF50998 SSF50998, 2 hits
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 3 hits
PS50294 WD_REPEATS_REGION, 2 hits

Sequencei

Sequence statusi: Complete.

A8JAN3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSLAPEWQHP FVNIFKLCDV DTMREFETKG DVTEHIDKII GKKVFKIRGM
60 70 80 90 100
IPAGNYLRVP RTKLQTLGLT GRLLYIQLKV TPIKVFAIHI EVVTEDHNIH
110 120 130 140 150
RISISNMYNP ESMKRKSNGV QLPFPKPSHR WCVLAVDLRE ALRGYTSSPF
160 170 180 190 200
ASVKAVQTCS WMTVRTMFAS DYKFSLQSLP GDMALSHALD SSLFEMVWLP
210 220 230 240 250
AEPQDAPTMD FMPPPKRYGT RARRPGTAET ADTAGAAGRK SLSGASAGGA
260 270 280 290 300
GPAKGGAKAG AAAGGKRAVS SAGATRGTPS QRGSTAGAAT PGSGAGGGGH
310 320 330 340 350
DGEEDFEDDL SEDLDNGAPL PPSPAVPPPL SPSVAARIAG RATSANIGAA
360 370 380 390 400
TAAGAIVGAA AAHPRPGESD ASARPFPRPT TALLAGAATT ASLRPPIASA
410 420 430 440 450
NVAKPEPGQP AAQPLLPDPA LTLTRVNAYS GEFVRCLAWL PGTDEVVFAA
460 470 480 490 500
ASVVVIMGVA DPGAAAQQQA AVTPGRQRYC LGHTAFVCAL AVASDGRLLA
510 520 530 540 550
SCQEGKEAIV RLWDTANCAC LAILNAHASG LSCVDLSPDL RALAAVGLDV
560 570 580 590 600
QGRQTIALWN IAELRAAGGP KVELVTRHAT EYNIKVLKFS AYQEDHLLTA
610 620 630 640 650
GRDSIRIYRL KAGQLRGTSV RLVPQDKRVT SFAGGVSAAV GPNIFTDIGF
660 670 680 690 700
EAGVGVYGVD AFKVYVSSAS GALFVVDYTT RQLDAIFQLH AAAINCLVVS
710 720 730 740 750
DGLVLTGGDD RLLRAWPLDF RDYLLEAEHE GAVTGLAMST DALRLAVGTE
760 770 780 790 800
NGTLGVLAIP THAYTTLLRS HCGAVNAVAV DPNRDQYCTV SSDGTLRIWH
810 820 830 840 850
LATHQQLYEF DAPGEAVSAI AYHPHPSHHE LAAGFANGRL RVFDVPSTTL
860 870 880 890 900
LQEHHQHRAG ITELLFSPGG DRLFSGGADG ALVVYDTARM YAPAQYLSAG
910 920 930 940 950
VRDIKVCCAV SSNGAFFASL VRDPYRRTTS LLVFHGRTLD PFMRIETDAA
960 970 980 990 1000
AYVKLAFSAD CNELWALTSG RRLDRYELKD GQLVQQIHEV SPLELTALCL
1010 1020 1030 1040 1050
DPAGRYAATA GADGLLRLWG CVPLPALRGL KGLPPNSAFL GHPSAILGAA
1060 1070 1080 1090 1100
FHRSGYLVTV GDADCVCVWR VNADHMQQER GHLAAAAHAL RGAAAGGGAA
1110 1120 1130 1140 1150
GASPLLLQGA AHHTQATGAL DPTDPRSRAH PSTALGPVAS ARDHQLTTRA
1160 1170 1180 1190 1200
AALGTPLPAG VLGLVPAPSA FTGTYTQGMA APSLGSTVAS PTRVTAATAN
1210 1220 1230 1240 1250
SMAALSLVAN SPAVAATAPG LPSHALVVPK PSPPPPSAAP ASPGRSPNRA
1260 1270 1280 1290 1300
LAGAGPARSR LPVPLPPSPQ PLPPPPPPRC SWLLGYSPTG SSNVAWNATT
1310 1320 1330 1340 1350
GLFCYVVEDM VVMEKLATRQ QRYLRGHNRP LSCLAASPDG ALVAAGPAAA
1360 1370 1380 1390 1400
EPAFTEPAAG ARAAQLQQQG VAVGPGGASP TAPFADVVVW EAASGRELWR
1410 1420 1430 1440 1450
LRYHPLGVQA LAFSPDGRWL VSLGRDPERG VVVWDVAAGL LVAAGRTEQS
1460 1470 1480 1490 1500
PRAAAWLWGG HNPAFATAGA DGLLLWTLQD NFLEQRTVPL SPTASPRDPR
1510 1520 1530 1540 1550
PVTALAVDPH GALLAAEAPA APGSQVPVWQ VQVELQPPQE PGGEAAVAPG
1560 1570 1580 1590 1600
GGGGMSAAVV QVAALPSGCV VTAMAAGLDF ALLATDGGSV VRYRRSTLSG
1610 1620 1630 1640 1650
TWLESSAVRL DGRVAALSAE PNMCDAVAAT DTATIWFVGM QDASCVPIVC
1660 1670 1680 1690 1700
GQAAPVTGLV PAPHSGRVMA STAADGLLRV WRLGPEDAEP ALELHSTSPA
1710 1720 1730 1740 1750
TAAAFLLRQP TDAPAHTLRH PPSAAPSSAA SSSPLDPLDP LPAADAAPAR
1760 1770 1780 1790 1800
PVLLPAPHLL GGYGDGSLRL FALEPAVQLS WALARHPAPV VGVAPHPRRG
1810 1820 1830 1840 1850
LVLSASSDGS LAVTDLSSTR LVSYITAFTA AGPTPHSPGG TGRRSPRGAA
1860 1870 1880 1890 1900
SPPPAPPRPG TGPLQAMAVS SGPGAPLAAL AWRDRLVVFA APWDDPACSP
1910 1920 1930 1940 1950
LAEYDVTPSD GRTDAADSHG LLSPDVPACL AFVNSSSGSS SSGTSAASPG
1960 1970 1980 1990 2000
LSAHLGGSSS GAPSSKLLAY ASPLLPGTVL LYDVRLAAVA RRVRLPQMVR
2010 2020 2030 2040 2050
SLAVAPDGGA MVVGCMGRSV FLVHLASGNT EELGGHAGAV AAASYTGDGG
2060 2070 2080
HAVTASGSVL MVWDAAQLLK GVTPPPPRML REF
Length:2,083
Mass (Da):214,904
Last modified:December 4, 2007 - v1
Checksum:i4BCCB4FDF6ABA400
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496150 Genomic DNA Translation: EDO99093.1
CM008975 Genomic DNA Translation: PNW72962.1
RefSeqiXP_001699039.1, XM_001698987.1

Genome annotation databases

EnsemblPlantsiPNW72962; PNW72962; CHLRE_14g613400v5
GeneIDi5724591
GrameneiPNW72962; PNW72962; CHLRE_14g613400v5
KEGGicre:CHLREDRAFT_18900

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496150 Genomic DNA Translation: EDO99093.1
CM008975 Genomic DNA Translation: PNW72962.1
RefSeqiXP_001699039.1, XM_001698987.1

3D structure databases

ProteinModelPortaliA8JAN3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.EDO99093

Proteomic databases

PaxDbiA8JAN3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiPNW72962; PNW72962; CHLRE_14g613400v5
GeneIDi5724591
GrameneiPNW72962; PNW72962; CHLRE_14g613400v5
KEGGicre:CHLREDRAFT_18900

Phylogenomic databases

eggNOGiKOG0266 Eukaryota
KOG3213 Eukaryota
ENOG410XNWN LUCA
InParanoidiA8JAN3
OMAiFVGPSKY

Family and domain databases

Gene3Di2.130.10.10, 6 hits
InterProiView protein in InterPro
IPR007714 CFA20/WDR90/C3orf67
IPR011047 Quinoprotein_ADH-like_supfam
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
IPR030466 WDR90
PANTHERiPTHR13720:SF24 PTHR13720:SF24, 1 hit
PfamiView protein in Pfam
PF05018 DUF667, 1 hit
PF00400 WD40, 4 hits
SMARTiView protein in SMART
SM00320 WD40, 16 hits
SUPFAMiSSF50978 SSF50978, 2 hits
SSF50998 SSF50998, 2 hits
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 3 hits
PS50294 WD_REPEATS_REGION, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPOC16_CHLRE
AccessioniPrimary (citable) accession number: A8JAN3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 10, 2018
Last sequence update: December 4, 2007
Last modified: November 7, 2018
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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