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UniProtKB - A8IVT4 (A8IVT4_CHLRE)

Entry version 55 (19 Jan 2022)
Sequence version 1 (04 Dec 2007)
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Protein
Submitted name:

Predicted protein

Gene

CHLREDRAFT_172465

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein family/group databases

Transport Classification Database

More...TCDBi		1.A.10.2.5, the glutamate-gated ion channel (gic) family of neurotransmitter receptors

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Predicted proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CHLREDRAFT_172465Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3055 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Chlorophyta › core chlorophytes › Chlorophyceae › CS clade › Chlamydomonadales › Chlamydomonadaceae › Chlamydomonas

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei595 – 615HelicalSequence analysisAdd BLAST21
Transmembranei772 – 797HelicalSequence analysisAdd BLAST26

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 18Sequence analysisAdd BLAST18
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500272387319 – 1003Sequence analysisAdd BLAST985

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		A8IVT4

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		A8IVT4, differential

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini385 – 737PBPbInterPro annotationAdd BLAST353

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni63 – 104DisorderedSequence analysisAdd BLAST42
Regioni813 – 833DisorderedSequence analysisAdd BLAST21
Regioni939 – 986DisorderedSequence analysisAdd BLAST48

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi88 – 104Polar residuesSequence analysisAdd BLAST17
Compositional biasi951 – 968Pro residuesSequence analysisAdd BLAST18

Keywords - Domaini

SignalSequence analysisARBA annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_299226_0_0_1

Database of Orthologous Groups

More...OrthoDBi		1722484at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR001638, Solute-binding_3/MltF_N

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00497, SBP_bac_3, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A8IVT4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEVKLALISA ALAALVTAVI MPYTDPENLA KLSQHPVAGL VLNTTADAFY 
        60         70         80         90        100
AFGTWVGGGD GDDPAAGGPS LRDYYPLTLP PRDPAAATES TTEPTTESAA 
       110        120        130        140        150
VSGSAAALGS ESAAGAGAGA AGAAGGAAGG GGAGAGTDAA AAVHFRALTR 
       160        170        180        190        200
VDVAEGETVL SVPLSLGLSI ASFRAVSVAA AELRAGGGVG TPGEDKLGPI 
       210        220        230        240        250
KVPVAIPEWA EDFGVMMPVL DLANHAFLGE GANVLYEILP PSNPGDGWAA 
       260        270        280        290        300
VLVAARPIAA GEPLLFDYVA GAEDGPSGLT CTDRWLEEYG FMPHSSDPHR 
       310        320        330        340        350
ECDTFDISRA EEVEEGSGSH VRQRWHLMEV CLAILLLGTV AMAKGPVAAP 
       360        370        380        390        400
DKPIRVCVLD SPPTVGLKNG VKLNDGQSLT PSAAKDNLQG MGIDMVDVLF 
       410        420        430        440        450
NQILKWNFTI VYYTFAQMGF SRILYDVRVQ ENCDVAVQSF FISASRDLCT 
       460        470        480        490        500
KACPLPDNST VLQSDSDYEK FACCVDFSQP FYDGGWTITS KISDGSNVNY 
       510        520        530        540        550
FSVFFQRDIV HIIAVAVITT FVIAHVVWLV ERWGPGHVWV EEEDAVVDPN 
       560        570        580        590        600
SDLASSAFSS KYLDALRDGV WFSSNVLLNG VIAPEKRIRT PLGRLIITVW 
       610        620        630        640        650
VLFGIFLISF VTSIISSTLT TAQLSASQIL TANDLAGRTV CLEEGFYNFF 
       660        670        680        690        700
FDSNFPGIGV SKVLVPHLSD CFEELKGGSA EAVFGVRDYS IDYFSQGKGR 
       710        720        730        740        750
GLLVSPTIYP QPYGMVWSQS WEYGSAVNEA LLLYREDVYA TTPSYRDSKR 
       760        770        780        790        800
RWYAGDASQI AYGGTAKQAQ KVWNWALVYT AVGLVAVYVC LQVLVYIGGR 
       810        820        830        840        850
FAHDAADDEE DVAATGSGDL RTDSGHSGAS LTRAKSVKAA LGTFASKMTA 
       860        870        880        890        900
RQPSTRVTPN HSTGQIATPS FTARQMMLSS GILLVYLSIS PQVTTFSLAM 
       910        920        930        940        950
GRDEQKQYLH CDTCGNKVLS YSFIRVWNHR HRRNASSVSG IDLDTFEPPP 
       960        970        980        990       1000
PDKQLETPAA PSPPAPEQLT AAPATEDAVA AGLTAVPEPE AAQLRPVLRA 

VSG
Length:1,003
Mass (Da):106,543
Last modified:December 4, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC75DF38B909D5503
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
DS496125 Genomic DNA Translation: EDP03586.1

NCBI Reference Sequences

More...RefSeqi		XP_001693017.1, XM_001692965.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		5718546

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		cre:CHLREDRAFT_172465

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496125 Genomic DNA Translation: EDP03586.1
RefSeqiXP_001693017.1, XM_001692965.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein family/group databases

TCDBi1.A.10.2.5, the glutamate-gated ion channel (gic) family of neurotransmitter receptors

Proteomic databases

PaxDbiA8IVT4

Genome annotation databases

GeneIDi5718546
KEGGicre:CHLREDRAFT_172465

Phylogenomic databases

HOGENOMiCLU_299226_0_0_1
OrthoDBi1722484at2759

Gene expression databases

ExpressionAtlasiA8IVT4, differential

Family and domain databases

InterProiView protein in InterPro
IPR001638, Solute-binding_3/MltF_N
PfamiView protein in Pfam
PF00497, SBP_bac_3, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA8IVT4_CHLRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A8IVT4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: January 19, 2022
This is version 55 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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