Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ribosomal RNA large subunit methyltransferase F

Gene

rlmF

Organism
Shewanella sediminis (strain HAW-EB3)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the adenine in position 1618 of 23S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine(1618) in 23S rRNA.UniRule annotation

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciSSED425104:G1G9Y-4729-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA large subunit methyltransferase FUniRule annotation (EC:2.1.1.181UniRule annotation)
Alternative name(s):
23S rRNA mA1618 methyltransferaseUniRule annotation
rRNA adenine N-6-methyltransferaseUniRule annotation
Gene namesi
Name:rlmFUniRule annotation
Ordered Locus Names:Ssed_4429
OrganismiShewanella sediminis (strain HAW-EB3)
Taxonomic identifieri425104 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000002015 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003499611 – 404Ribosomal RNA large subunit methyltransferase FAdd BLAST404

Interactioni

Protein-protein interaction databases

STRINGi425104.Ssed_4429

Structurei

3D structure databases

ProteinModelPortaliA8G1Q8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the methyltransferase superfamily. METTL16/RlmF family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105EBA Bacteria
COG3129 LUCA
HOGENOMiHOG000218605
KOiK06970
OMAiTEFHQGH
OrthoDBiPOG091H05H4

Family and domain databases

HAMAPiMF_01848 23SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR016909 rRNA_lsu_MeTfrase_F
IPR010286 rRNA_lsu_MeTfrase_F-like
IPR029063 SAM-dependent_MTases
PANTHERiPTHR13393 PTHR13393, 1 hit
PfamiView protein in Pfam
PF05971 Methyltransf_10, 2 hits
PIRSFiPIRSF029038 Mtase_YbiN_prd, 1 hit
SUPFAMiSSF53335 SSF53335, 2 hits

Sequencei

Sequence statusi: Complete.

A8G1Q8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKHSQKQNR QKQTTQKQTR RKKPAGKLKA KSEAKLDTRG KPETTEKKGL
60 70 80 90 100
HERNLHRDGY DFEQLIEASP ALKPYVRPNP YGNLSIDFAD PLAVKALNLA
110 120 130 140 150
LLQLHYRIEY WDIPAGFLCP PIPGRVDYLH YIADLLAGID SDTVGDKAEE
160 170 180 190 200
QVEEIGTRQN VPYASKPESS APKQRYKSQK RMKINALDIG TGANGIYPIL
210 220 230 240 250
GIQAYGWRFV ASDVDPLSIE NVNRIVGQNK ALQGKLKTRL QTDHQKVFHG
260 270 280 290 300
IIQADDRFDI TLCNPPFHAS LSEASEGSLR KVKNLAANRA AKGHKPEPAA
310 320 330 340 350
SKAKPDANEL NFGGQKAELW CEGGEKQFLA NMIRESKDFA TQCLWFTSLV
360 370 380 390 400
SKKENLQPCY AALEKVGAVT VKTIDMAQGN KLTRVLAWSY LTPKQQALWA

KYRS
Length:404
Mass (Da):45,236
Last modified:November 13, 2007 - v1
Checksum:iBF7474AFFB54E1C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000821 Genomic DNA Translation: ABV39031.1
RefSeqiWP_012144758.1, NC_009831.1

Genome annotation databases

EnsemblBacteriaiABV39031; ABV39031; Ssed_4429
KEGGisse:Ssed_4429

Similar proteinsi

Entry informationi

Entry nameiRLMF_SHESH
AccessioniPrimary (citable) accession number: A8G1Q8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: November 13, 2007
Last modified: February 28, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health