UniProtKB - A8DZD1 (A8DZD1_DANRE)
Protein
Submitted name:
Zgc:113232
Gene
zgc:113232
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- extracellular matrix structural constituent Source: GO_Central
GO - Biological processi
- extracellular matrix organization Source: GO_Central
Names & Taxonomyi
Protein namesi | Submitted name: Zgc:113232Imported |
Gene namesi | ORF Names:zgc:113232Imported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-050327-86, zgc:113232 |
Subcellular locationi
Extracellular region or secreted
- extracellular space Source: GO_Central
Other locations
- basement membrane Source: GO_Central
- collagen type IX trimer Source: GO_Central
- extracellular matrix Source: GO_Central
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 26 | Sequence analysisAdd BLAST | 26 | |
ChainiPRO_5002718409 | 27 – 637 | Sequence analysisAdd BLAST | 611 |
Proteomic databases
PeptideAtlasi | A8DZD1 |
Expressioni
Gene expression databases
Bgeei | ENSDARG00000040118, Expressed in embryo and 13 other tissues |
ExpressionAtlasi | A8DZD1, baseline |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 144 – 198 | DisorderedSequence analysisAdd BLAST | 55 | |
Regioni | 232 – 458 | DisorderedSequence analysisAdd BLAST | 227 | |
Regioni | 497 – 601 | DisorderedSequence analysisAdd BLAST | 105 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 378 – 411 | PolyampholyteSequence analysisAdd BLAST | 34 |
Keywords - Domaini
SignalSequence analysisPhylogenomic databases
GeneTreei | ENSGT00940000167743 |
OMAi | HTYEGSL |
Family and domain databases
InterProi | View protein in InterPro IPR008160, Collagen |
Pfami | View protein in Pfam PF01391, Collagen, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All
A8DZD1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MGASRVKVWT VSLSSVFLLC VLQSHAQQDY SGLLSGERMY EGSIAERYDE
60 70 80 90 100
HSGYKYRVDY PAESKRGSED ELSASGFDPY APAGTMVTMI TEETYPYSTG
110 120 130 140 150
EESFDYAKED KTLMTQVPYG GDAELGQEGP TECDCEPGEP GFGGFAGPKG
160 170 180 190 200
SRGLQGKQGF PGVQGREGYK GTKGVRGRGG DTGPEGDSGL DGEDGASGFF
210 220 230 240 250
GAIGLPGLPG DPGETGQLGV KGDIGIEGPR GGVGLHGKTG PVGPKGKSGK
260 270 280 290 300
LGGKGVKGQT GAPGFSGDRG EQGYLGYTGV PGDRGRTGPK GSKGTGGLPG
310 320 330 340 350
SDGEPGEDGT VGVPGVVGVP GAFGPKGMKG DRGLRGRTGR VGSVGPQGDS
360 370 380 390 400
GDAGISGKPG PKGLPGPTGA KGETGPDGEK GSLGRKGGKG AKGDKGDAGS
410 420 430 440 450
RGDKGQHGVK GRLGRDGLAG PIGPPGLPGP RGDEGPRGDL GDKGQSGPKG
460 470 480 490 500
EPGEIGPGLT DEQILQLCQG VVMAQISQYA SSIRAKCVQG CPVNNRTLIG
510 520 530 540 550
PPGGTGPRGS PGKAGKAGKT GAKGERGPQG IKGVEGQKGA PGEAGAKGQK
560 570 580 590 600
GQRGDAGKGL PGHDGHQGLR GLPGHPAEPK AGIEGPRGPR GFPGPVGQTG
610 620 630
MAGSAGIPGV CEARDCSIHA PVVRKEMGLV KGPGSQA
Computationally mapped potential isoform sequencesi
There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketQ58EP8 | Q58EP8_DANRE | Zgc:113232 | zgc:113232 | 655 | Annotation score: | ||
E7F4H7 | E7F4H7_DANRE | Zgc:113232 | zgc:113232 | 608 | Annotation score: | ||
A0A2R8Q491 | A0A2R8Q491_DANRE | Zgc:113232 | zgc:113232 | 609 | Annotation score: | ||
A0A2R8QUA2 | A0A2R8QUA2_DANRE | Zgc:113232 | zgc:113232 | 587 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL929190 Genomic DNA No translation available. |
RefSeqi | NP_001120985.1, NM_001127513.1 |
Genome annotation databases
Ensembli | ENSDART00000148101; ENSDARP00000116602; ENSDARG00000040118 |
GeneIDi | 541546 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AL929190 Genomic DNA No translation available. |
RefSeqi | NP_001120985.1, NM_001127513.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Proteomic databases
PeptideAtlasi | A8DZD1 |
Genome annotation databases
Ensembli | ENSDART00000148101; ENSDARP00000116602; ENSDARG00000040118 |
GeneIDi | 541546 |
Organism-specific databases
ZFINi | ZDB-GENE-050327-86, zgc:113232 |
Phylogenomic databases
GeneTreei | ENSGT00940000167743 |
OMAi | HTYEGSL |
Gene expression databases
Bgeei | ENSDARG00000040118, Expressed in embryo and 13 other tissues |
ExpressionAtlasi | A8DZD1, baseline |
Family and domain databases
InterProi | View protein in InterPro IPR008160, Collagen |
Pfami | View protein in Pfam PF01391, Collagen, 2 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A8DZD1_DANRE | |
Accessioni | A8DZD1Primary (citable) accession number: A8DZD1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 13, 2007 |
Last sequence update: | November 13, 2007 | |
Last modified: | April 7, 2021 | |
This is version 98 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |