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Protein

Sine oculis-binding protein homolog

Gene

SOBP

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Implicated in development of the cochlea.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri142 – 180FCS-type 1Sequence analysisAdd BLAST39
Zinc fingeri216 – 256FCS-type 2Sequence analysisAdd BLAST41

GO - Molecular functioni

GO - Biological processi

  • cochlea development Source: Ensembl
  • cognition Source: HGNC
  • inner ear morphogenesis Source: Ensembl
  • locomotory behavior Source: Ensembl
  • sensory perception of sound Source: Ensembl

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Sine oculis-binding protein homolog
Alternative name(s):
Jackson circler protein 1
Gene namesi
Name:SOBPImported
Synonyms:JXC1Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

EuPathDBiHostDB:ENSG00000112320.11
HGNCiHGNC:29256 SOBP
MIMi613667 gene
neXtProtiNX_A7XYQ1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Involvement in diseasei

Mental retardation, anterior maxillary protrusion, and strabismus (MRAMS)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA syndrome characterized by severe mental retardation, strabismus and dysmorphic features such as anterior maxillary protrusion with vertical maxillary excess, open bite and prominent crowded teeth. Some patients may lack dysmorphic features and manifest temporal lobe epilepsy and psychosis. Esotropia and amblyopia are present in some individuals.
See also OMIM:613671

Keywords - Diseasei

Mental retardation

Organism-specific databases

DisGeNETi55084
MalaCardsiSOBP
MIMi613671 phenotype
OpenTargetsiENSG00000112320
PharmGKBiPA162404346

Polymorphism and mutation databases

BioMutaiSOBP

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003122321 – 873Sine oculis-binding protein homologAdd BLAST873

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei629PhosphoserineBy similarity1
Cross-linki677Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources
Modified residuei699PhosphoserineBy similarity1

Keywords - PTMi

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

MaxQBiA7XYQ1
PaxDbiA7XYQ1
PRIDEiA7XYQ1
ProteomicsDBi1816

PTM databases

iPTMnetiA7XYQ1
PhosphoSitePlusiA7XYQ1

Expressioni

Gene expression databases

BgeeiENSG00000112320 Expressed in 227 organ(s), highest expression level in neocortex
CleanExiHS_SOBP
ExpressionAtlasiA7XYQ1 baseline and differential
GenevisibleiA7XYQ1 HS

Organism-specific databases

HPAiHPA029242

Interactioni

Subunit structurei

Interacts (via SIM domains) with SUMO1 and SUMO2.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

BioGridi120399, 4 interactors
IntActiA7XYQ1, 2 interactors
MINTiA7XYQ1
STRINGi9606.ENSP00000318900

Structurei

3D structure databases

ProteinModelPortaliA7XYQ1
SMRiA7XYQ1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi620 – 624SUMO interaction motif 1 (SIM); mediates the binding to polysumoylated substrates5
Motifi653 – 657SUMO interaction motif 2 (SIM); mediates the binding to polysumoylated substrates5

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi346 – 552Pro-richSequence analysisAdd BLAST207
Compositional biasi740 – 763Pro-richSequence analysisAdd BLAST24

Sequence similaritiesi

Belongs to the SOBP family.Sequence analysis

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri142 – 180FCS-type 1Sequence analysisAdd BLAST39
Zinc fingeri216 – 256FCS-type 2Sequence analysisAdd BLAST41

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiENOG410IEAE Eukaryota
ENOG4111QQS LUCA
GeneTreeiENSGT00730000111043
HOGENOMiHOG000008673
HOVERGENiHBG062766
InParanoidiA7XYQ1
OMAiEHGRSEV
OrthoDBiEOG091G040K
PhylomeDBiA7XYQ1
TreeFamiTF324359

Family and domain databases

InterProiView protein in InterPro
IPR026092 RAI2/SOBP
PANTHERiPTHR23186 PTHR23186, 1 hit
PfamiView protein in Pfam
PF15279 SOBP, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A7XYQ1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAEMEKEGRP PENKRSRKPA HPVKREINEE MKNFAENTMN ELLGWYGYDK
60 70 80 90 100
VELKDGEDIE FRSYPTDGES RQHISVLKEN SLPKPKLPED SVISPYNIST
110 120 130 140 150
GYSGLATGNG LSDSPAGSKD HGSVPIIVPL IPPPFIKPPA EDDVSNVQIM
160 170 180 190 200
CAWCQKVGIK RYSLSMGSEV KSFCSEKCFA ACRRAYFKRN KARDEDGHAE
210 220 230 240 250
NFPQQHYAKE TPRLAFKNNC ELLVCDWCKH IRHTKEYLDF GDGERRLQFC
260 270 280 290 300
SAKCLNQYKM DIFYKETQAN LPAGLCSTLH PPMENKAEGT GVQLLTPDSW
310 320 330 340 350
NIPLTDARRK APSPVATAGQ SQGPGPSAST TVSPSDTANC SVTKIPTPVP
360 370 380 390 400
KSIPISETPN IPPVSVQPPA SIGPPLGVPP RSPPMVMTNR GPVPLPIFME
410 420 430 440 450
QQIMQQIRPP FIRGPPHHAS NPNSPLSNPM LPGIGPPPGG PRNLGPTSSP
460 470 480 490 500
MHRPMLSPHI HPPSTPTMPG NPPGLLPPPP PGAPLPSLPF PPVSMMPNGP
510 520 530 540 550
MPVPQMMNFG LPSLAPLVPP PTLLVPYPVI VPLPVPIPIP IPIPHVSDSK
560 570 580 590 600
PPNGFSSNGE NFIPNAPGDS AAAGGKPSGH SLSPRDSKQG SSKSADSPPG
610 620 630 640 650
CSGQALSLAP TPAEHGRSEV VDLTRRAGSP PGPPGAGGQL GFPGVLQGPQ
660 670 680 690 700
DGVIDLTVGH RARLHNVIHR ALHAHVKAER EPSAAERRTC GGCRDGHCSP
710 720 730 740 750
PAAGDPGPGA PAGPEAAAAC NVIVNGTRGA AAEGAKSAEP PPEQPPPPPP
760 770 780 790 800
PAPPKKLLSP EEPAVSELES VKENNCASNC HLDGEAAKKL MGEEALAGGD
810 820 830 840 850
KSDPNLNNPA DEDHAYALRM LPKTGCVIQP VPKPAEKAAM APCIISSPML
860 870
SAGPEDLEPP LKRRCLRIRN QNK
Length:873
Mass (Da):92,658
Last modified:September 23, 2008 - v2
Checksum:i894DEF718F6E0CB0
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0C4DGT7A0A0C4DGT7_HUMAN
Sine oculis-binding protein homolog
SOBP
149Annotation score:

Sequence cautioni

The sequence AAH91526 differs from that shown. Intron retention.Curated
The sequence BAC03537 differs from that shown. Intron retention.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti623L → M in ABF72848 (Ref. 1) Curated1
Sequence conflicti646L → M in ABF72848 (Ref. 1) Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_062215683S → G1 PublicationCorresponds to variant dbSNP:rs9486659EnsemblClinVar.1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ507800 mRNA Translation: ABF72848.1
AL096816 Genomic DNA No translation available.
AL671934 Genomic DNA No translation available.
AL121957 Genomic DNA No translation available.
AK090879 mRNA Translation: BAC03537.1 Sequence problems.
BC091526 mRNA Translation: AAH91526.2 Sequence problems.
CCDSiCCDS43488.1
RefSeqiNP_060483.3, NM_018013.3
UniGeneiHs.445244

Genome annotation databases

EnsembliENST00000317357; ENSP00000318900; ENSG00000112320
GeneIDi55084
KEGGihsa:55084
UCSCiuc003prx.4 human

Keywords - Coding sequence diversityi

Polymorphism

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ507800 mRNA Translation: ABF72848.1
AL096816 Genomic DNA No translation available.
AL671934 Genomic DNA No translation available.
AL121957 Genomic DNA No translation available.
AK090879 mRNA Translation: BAC03537.1 Sequence problems.
BC091526 mRNA Translation: AAH91526.2 Sequence problems.
CCDSiCCDS43488.1
RefSeqiNP_060483.3, NM_018013.3
UniGeneiHs.445244

3D structure databases

ProteinModelPortaliA7XYQ1
SMRiA7XYQ1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi120399, 4 interactors
IntActiA7XYQ1, 2 interactors
MINTiA7XYQ1
STRINGi9606.ENSP00000318900

PTM databases

iPTMnetiA7XYQ1
PhosphoSitePlusiA7XYQ1

Polymorphism and mutation databases

BioMutaiSOBP

Proteomic databases

MaxQBiA7XYQ1
PaxDbiA7XYQ1
PRIDEiA7XYQ1
ProteomicsDBi1816

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000317357; ENSP00000318900; ENSG00000112320
GeneIDi55084
KEGGihsa:55084
UCSCiuc003prx.4 human

Organism-specific databases

CTDi55084
DisGeNETi55084
EuPathDBiHostDB:ENSG00000112320.11
GeneCardsiSOBP
H-InvDBiHIX0006109
HGNCiHGNC:29256 SOBP
HPAiHPA029242
MalaCardsiSOBP
MIMi613667 gene
613671 phenotype
neXtProtiNX_A7XYQ1
OpenTargetsiENSG00000112320
PharmGKBiPA162404346
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IEAE Eukaryota
ENOG4111QQS LUCA
GeneTreeiENSGT00730000111043
HOGENOMiHOG000008673
HOVERGENiHBG062766
InParanoidiA7XYQ1
OMAiEHGRSEV
OrthoDBiEOG091G040K
PhylomeDBiA7XYQ1
TreeFamiTF324359

Miscellaneous databases

ChiTaRSiSOBP human
GeneWikiiSobp
GenomeRNAii55084
PROiPR:A7XYQ1
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000112320 Expressed in 227 organ(s), highest expression level in neocortex
CleanExiHS_SOBP
ExpressionAtlasiA7XYQ1 baseline and differential
GenevisibleiA7XYQ1 HS

Family and domain databases

InterProiView protein in InterPro
IPR026092 RAI2/SOBP
PANTHERiPTHR23186 PTHR23186, 1 hit
PfamiView protein in Pfam
PF15279 SOBP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiSOBP_HUMAN
AccessioniPrimary (citable) accession number: A7XYQ1
Secondary accession number(s): B0QZ12, Q5BJD4, Q8N2B2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: September 23, 2008
Last modified: November 7, 2018
This is version 86 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
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Main funding by: National Institutes of Health

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