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Entry version 87 (07 Oct 2020)
Sequence version 1 (11 Sep 2007)
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Protein

Genome polyprotein

Gene
N/A
Organism
Slow bee paralysis virus
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicaseARBA annotation, Hydrolase, Nucleotidyltransferase, Protease, RNA-bindingARBA annotation, RNA-directed RNA polymeraseARBA annotation, Thiol proteaseARBA annotation, Transferase
Biological processViral RNA replicationARBA annotation
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Genome polyproteinARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSlow bee paralysis virusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri458132 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaOrthornaviraePisuviricotaPisoniviricetesPicornaviralesIflaviridaeIflavirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000204258 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Host membraneARBA annotation, Membrane, VirionARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

Covalent protein-RNA linkageARBA annotation

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A7LM73

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1457 – 1625SF3 helicaseInterPro annotationAdd BLAST169
Domaini2703 – 2836RdRp catalyticInterPro annotationAdd BLAST134

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni2480 – 2499DisorderedSequence analysisAdd BLAST20

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00205, rhv_like, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.40.10.10, 1 hit
2.60.120.20, 3 hits
3.30.70.270, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014872, Dicistrovirus_capsid-polyPr_C
IPR043502, DNA/RNA_pol_sf
IPR000605, Helicase_SF3_ssDNA/RNA_vir
IPR014759, Helicase_SF3_ssRNA_vir
IPR000199, Peptidase_C3A/C3B_picornavir
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR001676, Picornavirus_capsid
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR033703, Rhv-like
IPR001205, RNA-dir_pol_C
IPR007094, RNA-dir_pol_PSvirus
IPR029053, Viral_coat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08762, CRPV_capsid, 1 hit
PF00548, Peptidase_C3, 1 hit
PF00680, RdRP_1, 1 hit
PF00073, Rhv, 1 hit
PF00910, RNA_helicase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50494, SSF50494, 1 hit
SSF56672, SSF56672, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50507, RDRP_SSRNA_POS, 1 hit
PS51218, SF3_HELICASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A7LM73-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEHTPLLSSF PITLLDHCGG NRKIHWTRCY EQKYWLPFSC CKVASRLPCV
60 70 80 90 100
NVRRSYMWYS KKQSKWIYLS ESDFRACKAG IYKRREEQEK EKLWSELCDI
110 120 130 140 150
CSWECFEYYK FRDQRLLLLL RKKIADKAQC RCRTNCKLVT IKHGYVRRVK
160 170 180 190 200
TIEPCEAIEL TNAETFGSNL DFAQPEMDRP EGSEERTVQT SNVVLGETNI
210 220 230 240 250
ESQDIASKEY SPTWDRLASS EVSDEYPMLT DRWLFWKSVK WEVNDSAFGK
260 270 280 290 300
MLVQEKFPQS WVQMDVNVNN IPRYTNIPNF IPFNIHQYMR ADFEVKIYVN
310 320 330 340 350
PNDFVSGWLI MAFLYQGSEM FDYKLRRNPA ALMQMPHVLV NVGAANEATL
360 370 380 390 400
KIPYRYVRPF MRCKDILRGD NLITGVTEPL NMGVLFVEVL IPFRTSAASS
410 420 430 440 450
APKSLDVSLF VKMTNAKFTG MVDGSIALLS KPIALPEMDR ILDNGLGVVS
460 470 480 490 500
KLLKDVNCDN PPDPTPAKFF VPIPSHSWAH GTNTSEPTNT LRLDGGVVGV
510 520 530 540 550
GRSDDIGTSD TAISGIIGVY GLLKPFDWNA NDTGRNVGGH LLWSMPVHPQ
560 570 580 590 600
VDKDQVIQVM TQSKLTQYYL PPISVVSSLY AYTRGSIKYK FLFGNNPRHN
610 620 630 640 650
ARLLVAYIPG ISSDNRLTLE RARNSAHVVF SLNEVSEFVF TVPYITDTMW
660 670 680 690 700
WPRKYGGPQA AGEFVAPSYI CMFILNPLVA MESVPSIVTI VPMIAAGDDF
710 720 730 740 750
EVAVPAQPAV GLSRNIDVIY PKDSIISFKS GYFPVYVGSW HSFFDSTKAI
760 770 780 790 800
LRYGAVSDHI AQLGNIPANV NRKAFWIVVG DTIKFKTKLD KINGTEWFIP
810 820 830 840 850
EGEYTLGYGV VWRDGAYAYM VPYPLTPLGE KIAQYTASLL ASNTAISQIR
860 870 880 890 900
PYIPDYIVDS AASKDNILWS PIEDRLRAQT EWVMAEPEME RTFTPNVMQP
910 920 930 940 950
TPLLPTTNDG RVTFGEAFND LKDLARRYQL YWEGTILEGN LRAIRRNSAL
960 970 980 990 1000
VQLPLYPHGL RIQPDVNNPI WNIMRDGHIP VISSGFRYFR GGLRLRIVVE
1010 1020 1030 1040 1050
GLNSCVWVQH HPDRPSIFSR PIIGRYIAAK DAYRNHAYAA YVQNMSVNRT
1060 1070 1080 1090 1100
IEVEVPFYQP GLYGMLNASD NNTANSFDRL RFTGLGDLLI GIEGEQPIPK
1110 1120 1130 1140 1150
EGIEISVYYS IADDFSFNIF CGFPPMVYCD ETYSAATPDL AQYFEDEVTI
1160 1170 1180 1190 1200
AQPEMMMSMC QGFVGSLIGH HLQRATTYGI ESAKESIRDV VKDEFKTQIK
1210 1220 1230 1240 1250
PELDNLNKVI GEAANSIGAS FGDILPQQLI INAMGQLMQV FSNPSPVALA
1260 1270 1280 1290 1300
IAIVTFIGSI VTLSMELVST LSDSLRIFLE KVWYRYFHQA TEQQAAGASA
1310 1320 1330 1340 1350
MPEGFWDEAD DKSLHGILGM IFSAICVSLG LSMAPPKQFP SVMKGVKESL
1360 1370 1380 1390 1400
NTANASVTFF RNVVDAIKYM YTYCMGASDE EMRARIIIER EYPNLKHWCE
1410 1420 1430 1440 1450
EVIQLLDPRS RNIVEHDARQ ASRVFDACIY GAQILQENLD KSMPGGKVIY
1460 1470 1480 1490 1500
DLYTRIVKLR DDLIELGNHP DVRFEAFPVW IVGSAGIGKS YNTTELCKRA
1510 1520 1530 1540 1550
LQSINYRTKE SMIYWLALGQ KYWNGIRNPP VVARDEAYAV SGQFTEEEIS
1560 1570 1580 1590 1600
VHLAMCSSCI LNPPMAALSE KNKRINPLIY YMNANCAFPS IPEARHIGAI
1610 1620 1630 1640 1650
YRRRKILAEF DFTEEIKRTY PNVLDASELP PNARINNNHL RIRVAHDPKN
1660 1670 1680 1690 1700
VNTTWSEWMS FDEFSNHFCR KFQEHMEAER VNFRRRMDAA YALDPDYVPG
1710 1720 1730 1740 1750
SNLNYVGDYE LPLQTLHERY IYERELAREY LANIENPVNE IEEDGGFWSN
1760 1770 1780 1790 1800
VKRLYENLTT GAADTEMDVP GPSTPSEPPS KRVLRQFLVD HCKFKEDAAA
1810 1820 1830 1840 1850
LLTRGLGVCS EQDVRTFALP PEYQFMKDRE FVSAASIYCD TMSCLPNSVC
1860 1870 1880 1890 1900
CSYRRIGSAM NPRSKIGSNW FVLPKNYEDL GGKDAIRSYC YWWIRCYQLR
1910 1920 1930 1940 1950
SFKKILKKEN YVEWADRMLH LIGCEPVNNY EVELRRQLWK IRGASESEII
1960 1970 1980 1990 2000
DMLKELDAEA RAHNMSDLMA GKELPRITLM WLLTDLTDND TSVFCDHCKV
2010 2020 2030 2040 2050
FATYMRDLSV LEYVPRYGII RYPGNFGCMK TIPAECQCED SIFNNVLFKN
2060 2070 2080 2090 2100
AMRILWDHDH VGPEFTEFQD SQTNPFVMQE HNNLRNETRS LLSRIWDWAK
2110 2120 2130 2140 2150
DWWKTTVVPF VGAILTFLYE HWAKILSIIL GCVVLYATFT SAKSPTDACM
2160 2170 2180 2190 2200
AAAKVSVPVM AGAVGTWSSP EGSVYQAGER VFKASNAPKP ANRESVSDQM
2210 2220 2230 2240 2250
HITEQKVINN TCFIICKWQD GKDTKFLRAR CLAIKGRDII VIKHYLQEFK
2260 2270 2280 2290 2300
SRPNPTYMFS YKINNSMANT YIDSSIIDNA YIYKINNSSA FSNIALIKLP
2310 2320 2330 2340 2350
KHVPMFKDIS KSIVTQGDHA NVGHFCSIVS QQYDEHPVVR SQVPVTWKQH
2360 2370 2380 2390 2400
LVIAGDRHVE QIIMDKCYEY NVRGFGMCGS ALVSPGVCCG NGGVIGLHVA
2410 2420 2430 2440 2450
GEKGSGFSEP IFREMFEPVI EKSDPVVSLP NLRSVSESNV QLDHNLILYG
2460 2470 2480 2490 2500
CVDEKMSHKE SGKSKIIPSL VHGEIYPVAT EPNPLRPGDP RQPPGSHPLR
2510 2520 2530 2540 2550
DGCAKHGLGM VHPFPQEDLE QVNNDARNVL LNEVKNPLCE MRLLTLQEQV
2560 2570 2580 2590 2600
CGSTSIPHCE SVNWNSSEGF PLCNRRPAGV TGKKWLFDMD ETAEGYVLKN
2610 2620 2630 2640 2650
IDPQLALMLK TNKDLRNRNI VCPPIYIDCL KDYRLPPEKC CIPGKTRIFS
2660 2670 2680 2690 2700
IAPIQTTLEI REYMGLFLSG YKSATVMGQH GIGINPDSYD WTRLANYLHE
2710 2720 2730 2740 2750
VGDNIVTGDY ANFGPCVSSQ IVYSCIDDII YWHKINGATE DHCRHLELLL
2760 2770 2780 2790 2800
KYSILLPLHL CDNCVYQSLN GIASGSPITA ELNSEVGKKY IKLAFLGICR
2810 2820 2830 2840 2850
QLNYKYSLND FNKHCRVVVY GDDLILSVSD AFVSWFNLQS ISEYLDNYGI
2860 2870 2880 2890 2900
RLTDVTKDGT IVKYRPLADS SFLKRSFKPH PSRSGIYLAP IEPRSYQECT
2910 2920 2930 2940 2950
NWCHKQNDEI EATVEVLRAS CVLAYGRGPD EYNNHVNKIR RVCALKGLRF
2960
DPLTWAALDK ENFG
Length:2,964
Mass (Da):336,268
Last modified:September 11, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB77D2A6C2C388917
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
EU035616 Genomic RNA Translation: ABS84820.1
KY243931 Genomic RNA Translation: APZ86804.1

NCBI Reference Sequences

More...
RefSeqi
YP_003622540.1, NC_014137.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
9121914

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:9121914

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU035616 Genomic RNA Translation: ABS84820.1
KY243931 Genomic RNA Translation: APZ86804.1
RefSeqiYP_003622540.1, NC_014137.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5J96X-ray3.41A889-1154[»]
B177-437[»]
C459-888[»]
5J98X-ray2.60A889-1154[»]
B177-437[»]
C459-888[»]
5LK7electron microscopy3.42A889-1154[»]
B177-437[»]
C459-888[»]
5LK8electron microscopy3.42A889-1154[»]
B177-437[»]
C459-888[»]
SMRiA7LM73
ModBaseiSearch...
PDBe-KBiSearch...

Genome annotation databases

GeneIDi9121914
KEGGivg:9121914

Family and domain databases

CDDicd00205, rhv_like, 2 hits
Gene3Di2.40.10.10, 1 hit
2.60.120.20, 3 hits
3.30.70.270, 1 hit
InterProiView protein in InterPro
IPR014872, Dicistrovirus_capsid-polyPr_C
IPR043502, DNA/RNA_pol_sf
IPR000605, Helicase_SF3_ssDNA/RNA_vir
IPR014759, Helicase_SF3_ssRNA_vir
IPR000199, Peptidase_C3A/C3B_picornavir
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR001676, Picornavirus_capsid
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR033703, Rhv-like
IPR001205, RNA-dir_pol_C
IPR007094, RNA-dir_pol_PSvirus
IPR029053, Viral_coat
PfamiView protein in Pfam
PF08762, CRPV_capsid, 1 hit
PF00548, Peptidase_C3, 1 hit
PF00680, RdRP_1, 1 hit
PF00073, Rhv, 1 hit
PF00910, RNA_helicase, 1 hit
SUPFAMiSSF50494, SSF50494, 1 hit
SSF56672, SSF56672, 1 hit
PROSITEiView protein in PROSITE
PS50507, RDRP_SSRNA_POS, 1 hit
PS51218, SF3_HELICASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA7LM73_9VIRU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A7LM73
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: October 7, 2020
This is version 87 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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