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Entry version 82 (08 May 2019)
Sequence version 1 (11 Sep 2007)
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Protein

Endoribonuclease Dicer homolog 4

Gene

DCL4

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production.2 Publications

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+By similarity, Mn2+By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi1252Magnesium or manganeseBy similarity1
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei1340Important for activityBy similarity1
Metal bindingi1344Magnesium or manganeseBy similarity1
Metal bindingi1347Magnesium or manganeseBy similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi50 – 57ATPPROSITE-ProRule annotation8

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • helicase activity Source: UniProtKB-KW
  • metal ion binding Source: UniProtKB-KW
  • ribonuclease III activity Source: GO_Central
  • RNA binding Source: UniProtKB-KW

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionEndonuclease, Helicase, Hydrolase, Nuclease, RNA-binding
Biological processRNA-mediated gene silencing
LigandATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Endoribonuclease Dicer homolog 4 (EC:3.1.26.-)
Alternative name(s):
Dicer-like protein 4
Short name:
OsDCL4
Protein SHOOT ORGANIZATION 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:DCL4
Synonyms:SHO1
Ordered Locus Names:Os04g0509300, LOC_Os04g43050
ORF Names:OSJNBb0065L13.5
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Formation of an incomplete shoot apical meristem (SAM), abnormal vegetative development with alteration of adaxial/abaxial polarity in both coleoptiles and the first leaves. Abnormal spikelet morphology with disruption of organ identity and lemma polarity.2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003784211 – 1657Endoribonuclease Dicer homolog 4Add BLAST1657

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
A7LFZ6

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in roots, leaf blades, leaf sheaths, shoot apices and spikelets.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A7LFZ6 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
A7LFZ6 OS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

May interact with ARGONAUTE1 or PINHEAD through their common PAZ domains.By similarity

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4530.OS04T0509300-01

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini37 – 214Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST178
Domaini400 – 567Helicase C-terminalPROSITE-ProRule annotationAdd BLAST168
Domaini585 – 675Dicer dsRNA-binding foldPROSITE-ProRule annotationAdd BLAST91
Domaini845 – 978PAZPROSITE-ProRule annotationAdd BLAST134
Domaini1010 – 1173RNase III 1PROSITE-ProRule annotationAdd BLAST164
Domaini1214 – 1358RNase III 2PROSITE-ProRule annotationAdd BLAST145
Domaini1384 – 1451DRBM 1PROSITE-ProRule annotationAdd BLAST68
Domaini1569 – 1645DRBM 2PROSITE-ProRule annotationAdd BLAST77

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi157 – 160DECH boxBy similarity4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the helicase family. Dicer subfamily.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000083706

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A7LFZ6

KEGG Orthology (KO)

More...
KOi
K11592

Database of Orthologous Groups

More...
OrthoDBi
1337630at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00048 DSRM, 1 hit
cd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1520.10, 1 hit
3.30.160.380, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR014720 dsRBD_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR003100 PAZ_dom
IPR036085 PAZ_dom_sf
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00270 DEAD, 1 hit
PF03368 Dicer_dimer, 1 hit
PF00035 dsrm, 1 hit
PF00271 Helicase_C, 1 hit
PF02170 PAZ, 1 hit
PF00636 Ribonuclease_3, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00358 DSRM, 2 hits
SM00490 HELICc, 1 hit
SM00949 PAZ, 1 hit
SM00535 RIBOc, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF101690 SSF101690, 1 hit
SSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS50137 DS_RBD, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50821 PAZ, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: A7LFZ6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MGDAAAAAPA AAAAGPSSTR GEPKDPRTIA RKYQLDLCKR AVEENIIVYL
60 70 80 90 100
GTGCGKTHIA VLLIYELGHL IRKPSREVCI FLAPTIPLVR QQAVVIASST
110 120 130 140 150
DFKVQCYYGN GKNSRDHQEW ENDMREFEVL VMTPQILLQS LRHCFIKMNS
160 170 180 190 200
IALLILDECH HAQPQKRHPY AQIMKEFYNS NSVEKFPRVF GMTASPIIGK
210 220 230 240 250
GVMPSHSFTE KGGRSPCQPL IFFLPKGGSN KLNYTKCINS LEELLHAKVC
260 270 280 290 300
SVDNEELESV VASPDMEVYF YGPVNHSNLT TICIKELDSL KLQSERMLRA
310 320 330 340 350
SLCDFKDSQK KLKSLWRLHE NIIFCLQELG SFGALQAART FLSFDGDKLD
360 370 380 390 400
RREVDLNGST SSFAHHYLNG ATSILSRNKT DGSHAGSFDL EKLEEPFFSN
410 420 430 440 450
KFSVLINVLS RYGLQENMKC IVFVKRITVA RAISNILQNL KCLEFWKCEF
460 470 480 490 500
LVGCHSGSKN MSRNKMDAIV QRFSSGEVNL LVATSVGEEG LDIQTCCLVV
510 520 530 540 550
RFDLPETVAS FIQSRGRARM TKSKYVVLLE RENQSHEKLL NGYIAGESIM
560 570 580 590 600
NEEIDSRTSN DMFDCLEENI YQVDNTGASI STACSVSLLH CYCDNLPRDM
610 620 630 640 650
FFTPSPVFFY IDGIEGIICR LILPPNAAFR QADGQPCLSK DEAKRDACLK
660 670 680 690 700
ACVKLHKLGA LTDFLLPGPG SRKNKVSVTN NSSNNKVEDD SLREELHEML
710 720 730 740 750
IPAVLKPSGL KLDSLSNLHF YYVKFIPIPE DRRYQMFGLF VINPLPVEAE
760 770 780 790 800
TLQVDLHLAR GRIVKAGIKH LGKIAFEKEK MMLAHKFQEM CLKILLDRSE
810 820 830 840 850
FTSPHVKLGN DVTLEINSTF YLLLPIKQKC YGDRFMIDWP AVERCLSSPI
860 870 880 890 900
FKDPIDVSVH ASYSSNESLR LLDGIFSKTD VVGSVVFSPH NNIFFFVDGI
910 920 930 940 950
LDEINAWSEH SGATYAEHFK ERFRIELSHP EQPLLKAKQI FNLRNLLHNR
960 970 980 990 1000
LPETTESEGR ELLEHFVELP PELCSLKVIG FSKDMGSSLS LLPSLMYRLE
1010 1020 1030 1040 1050
NLLVAIELKD VMLSSFPEAS QISASGILEA LTTEKCLERI SLERFEVLGD
1060 1070 1080 1090 1100
AFLKYVVGRH KFITYEGLDE GQLTRRRSDV VNNSHLYELS IRKKLQVYIR
1110 1120 1130 1140 1150
DQQFEPTQFF APGRPCKVVC NTDVEVRLHQ MDIHPDNREN CNLRCTRSHH
1160 1170 1180 1190 1200
WLHRKVIADV VESLIGAFLV EGGFKAAFAF LHWIGIDVDF NNPALYRVLD
1210 1220 1230 1240 1250
SSSINLSLMD YTDIAGLEEL IGYKFKHKGL LLQAFVHPSF SQHSGGCYQR
1260 1270 1280 1290 1300
LEFLGDAVLE YVITSYLYST YPDIKPGQIT DLRSLAVGND SLAYAAVEKS
1310 1320 1330 1340 1350
IHKHLIKDSN HLTSAISKFE MYVKLSNSEK DLLEEPACPK ALGDIVESCI
1360 1370 1380 1390 1400
GAVLLDSGFN LNYVWKVMLM LLKPVLTFAN MHTNPMRELR ELCQCHGFEL
1410 1420 1430 1440 1450
GLPKPMKADG EYHVKVEVNI KSKIIICTAA NRNSKAARKF AAQETLSKLK
1460 1470 1480 1490 1500
NYGYKHRNKS LEEILIVARK RESELIGYNE DPIDVEADIS VKMKSPHIHE
1510 1520 1530 1540 1550
ENIPFQNTET SFTRSSKFHN QIIAGSGKHD VNNGRNNQPK LATQSGRLPS
1560 1570 1580 1590 1600
EATEKSNKKV YHGDMVHKTA RSFLFELCAA NYWKPPEFKL CKEEGPSHLR
1610 1620 1630 1640 1650
KFTYKVVVEI KGASATLLEC HSDGKLQKKA AQEHAAQGAL WCLKQLGHLP

KEEDVRV
Length:1,657
Mass (Da):186,989
Last modified:September 11, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i59E754B94692266D
GO
Isoform 2 (identifier: A7LFZ6-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     202-227: Missing.

Note: No experimental confirmation available.
Show »
Length:1,631
Mass (Da):184,146
Checksum:i28820F81F20F3013
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAF15192 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAG90040 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAE03362 differs from that shown. Reason: Erroneous gene model prediction.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_037580202 – 227Missing in isoform 2. 1 PublicationAdd BLAST26

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
EU009924 mRNA Translation: ABS32306.1
AB353922 mRNA Translation: BAF80150.1
AL606607 Genomic DNA Translation: CAE03362.1 Sequence problems.
AP008210 Genomic DNA Translation: BAF15192.1 Sequence problems.
AP014960 Genomic DNA Translation: BAS90022.1
AP014960 Genomic DNA Translation: BAS90023.1
AK066586 mRNA Translation: BAG90040.1 Different initiation.

NCBI Reference Sequences

More...
RefSeqi
XP_015636293.1, XM_015780807.1 [A7LFZ6-2]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os04t0509300-01; Os04t0509300-01; Os04g0509300 [A7LFZ6-2]
Os04t0509300-02; Os04t0509300-02; Os04g0509300 [A7LFZ6-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4336362

Gramene; a comparative resource for plants

More...
Gramenei
Os04t0509300-01; Os04t0509300-01; Os04g0509300 [A7LFZ6-2]
Os04t0509300-02; Os04t0509300-02; Os04g0509300 [A7LFZ6-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4336362

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU009924 mRNA Translation: ABS32306.1
AB353922 mRNA Translation: BAF80150.1
AL606607 Genomic DNA Translation: CAE03362.1 Sequence problems.
AP008210 Genomic DNA Translation: BAF15192.1 Sequence problems.
AP014960 Genomic DNA Translation: BAS90022.1
AP014960 Genomic DNA Translation: BAS90023.1
AK066586 mRNA Translation: BAG90040.1 Different initiation.
RefSeqiXP_015636293.1, XM_015780807.1 [A7LFZ6-2]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi4530.OS04T0509300-01

Proteomic databases

PRIDEiA7LFZ6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs04t0509300-01; Os04t0509300-01; Os04g0509300 [A7LFZ6-2]
Os04t0509300-02; Os04t0509300-02; Os04g0509300 [A7LFZ6-1]
GeneIDi4336362
GrameneiOs04t0509300-01; Os04t0509300-01; Os04g0509300 [A7LFZ6-2]
Os04t0509300-02; Os04t0509300-02; Os04g0509300 [A7LFZ6-1]
KEGGiosa:4336362

Phylogenomic databases

HOGENOMiHOG000083706
InParanoidiA7LFZ6
KOiK11592
OrthoDBi1337630at2759

Gene expression databases

ExpressionAtlasiA7LFZ6 baseline and differential
GenevisibleiA7LFZ6 OS

Family and domain databases

CDDicd00048 DSRM, 1 hit
cd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits
Gene3Di1.10.1520.10, 1 hit
3.30.160.380, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR014720 dsRBD_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR003100 PAZ_dom
IPR036085 PAZ_dom_sf
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF03368 Dicer_dimer, 1 hit
PF00035 dsrm, 1 hit
PF00271 Helicase_C, 1 hit
PF02170 PAZ, 1 hit
PF00636 Ribonuclease_3, 2 hits
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00358 DSRM, 2 hits
SM00490 HELICc, 1 hit
SM00949 PAZ, 1 hit
SM00535 RIBOc, 2 hits
SUPFAMiSSF101690 SSF101690, 1 hit
SSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits
PROSITEiView protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS50137 DS_RBD, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50821 PAZ, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiDCL4_ORYSJ
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A7LFZ6
Secondary accession number(s): A0A0P0WCA9
, A7VMN4, B7ECE3, Q0JBU5, Q7XQ14
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 7, 2009
Last sequence update: September 11, 2007
Last modified: May 8, 2019
This is version 82 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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