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Protein

LIM domain-containing protein

Gene

Pinch-1

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM domain-containing proteinUniRule annotation
Gene namesi
Name:Pinch-1Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Structurei

3D structure databases

ProteinModelPortaliA7LBJ1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini19 – 80LIM zinc-bindingInterPro annotationAdd BLAST62
Domaini82 – 139LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini144 – 201LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini202 – 261LIM zinc-bindingInterPro annotationAdd BLAST60
Domaini262 – 321LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG000053

Family and domain databases

InterProiView protein in InterPro
IPR017351 PINCH
IPR001781 Znf_LIM
PANTHERiPTHR24210 PTHR24210, 1 hit
PfamiView protein in Pfam
PF00412 LIM, 5 hits
PIRSFiPIRSF038003 PINCH, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 5 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 2 hits
PS50023 LIM_DOMAIN_2, 5 hits

Sequencei

Sequence statusi: Complete.

A7LBJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGVVGMTNS NMANALANAI CERCRSGFAP SEKIVNSNGE LYHEQCFVCA
60 70 80 90 100
QCFQQFPEGL FYEFEGRKYC EHDFQMLFAP CCHQCGEFII GRVIKAMNNS
110 120 130 140 150
WHPECFRCDI CQQVLADIGF VKNAGRHLCR PCHNREKARG LGKYICQKCH
160 170 180 190 200
AIIEEHPLIF KNDPYHPDHF NCANCGKELT ADARELKGEL YCLPCHDKMG
210 220 230 240 250
VPICGACRRP IEGRVVNAMG KQWHVEHFVC AKCEKPFLGH RHYERKGLAY
260 270 280 290 300
CETHYNQLFG DVCFHCNRVI EGDVVSALNK AWCVNCFACS TCNTKLTLKN
310 320 330
KFVEFDMKPV CKKCYEKFPL ELKKRLKKLS EPLAKK
Length:336
Mass (Da):38,489
Last modified:September 11, 2007 - v1
Checksum:iEF73B61ABC8C219D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF990559 mRNA Translation: ABS17667.1
UniGeneiXl.8188

Similar proteinsi

Entry informationi

Entry nameiA7LBJ1_XENLA
AccessioniPrimary (citable) accession number: A7LBJ1
Entry historyiIntegrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: July 5, 2017
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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