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Entry version 77 (08 May 2019)
Sequence version 1 (21 Aug 2007)
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Protein

Collagen alpha-1(XVII) chain

Gene

COL17A1

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May play a role in the integrity of hemidesmosome and the attachment of basal keratinocytes to the underlying basement membrane.By similarity
The 120 kDa linear IgA disease antigen homolog is an anchoring filament component involved in dermal-epidermal cohesion.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • extracellular matrix structural constituent Source: GO_Central

GO - Biological processi

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-BTA-1650814 Collagen biosynthesis and modifying enzymes
R-BTA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-BTA-2022090 Assembly of collagen fibrils and other multimeric structures
R-BTA-446107 Type I hemidesmosome assembly
R-BTA-8948216 Collagen chain trimerization

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Collagen alpha-1(XVII) chain
Alternative name(s):
180 kDa bullous pemphigoid antigen 2
Bullous pemphigoid antigen 2
Cleaved into the following chain:
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:COL17A1
Synonyms:BP180, BPAG2
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBos taurus (Bovine)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9913 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009136 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

Organism-specific databases

Vertebrate Gene Nomenclature Database

More...
VGNCi
VGNC:27558 COL17A1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 474CytoplasmicSequence analysisAdd BLAST474
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei475 – 495Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini496 – 1473ExtracellularSequence analysisAdd BLAST978

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Basement membrane, Cell junction, Extracellular matrix, Membrane, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_0000342553? – 1473120 kDa linear IgA disease antigen homolog
ChainiPRO_00003425521 – 1473Collagen alpha-1(XVII) chainAdd BLAST1473

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi1404N-linked (GlcNAc...) asparagineSequence analysis1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

The intracellular/endo domain is disulfide-linked.By similarity
Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.
The ectodomain is shedded from the surface of keratinocytes resulting in a 120-kDa soluble form, also named as 120 kDa linear IgA disease antigen homolog. The shedding is mediated by membrane-bound metalloproteases.

Keywords - PTMi

Disulfide bond, Glycoprotein, Hydroxylation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A6QPB3

PeptideAtlas

More...
PeptideAtlasi
A6QPB3

PRoteomics IDEntifications database

More...
PRIDEi
A6QPB3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSBTAG00000002430 Expressed in 5 organ(s), highest expression level in colon

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A6QPB3 differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homotrimers of alpha 1(XVII)chains. Interacts (via cytoplasmic region) with ITGB4 (via cytoplasmic region). Interacts (via cytoplasmic region) with DST (via N-terminus). Interacts (via N-terminus) with PLEC. Interacts (via cytoplasmic region) with DSP (By similarity).By similarity

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
9913.ENSBTAP00000013271

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A6QPB3

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 572Nonhelical region (NC16)Add BLAST572
Regioni146 – 231Necessary for interaction with DST and for the recruitment of DST to hemidesmosomeBy similarityAdd BLAST86
Regioni573 – 1459Triple-helical regionAdd BLAST887
Regioni1460 – 1473Nonhelical region (NC1)Add BLAST14

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi417 – 1457Gly-richAdd BLAST1041
Compositional biasi1283 – 1306Ser-richAdd BLAST24

Keywords - Domaini

Collagen, Repeat, Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3544 Eukaryota
ENOG410XNMM LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000111885

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A6QPB3

KEGG Orthology (KO)

More...
KOi
K07603

Identification of Orthologs from Complete Genome Data

More...
OMAi
WSSISME

Database of Orthologous Groups

More...
OrthoDBi
718661at2759

TreeFam database of animal gene trees

More...
TreeFami
TF332289

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160 Collagen

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391 Collagen, 5 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

A6QPB3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDITQKNKRD GTEVTERIIT ETVTTRLTSL PPKGGTSNGY AKTGSLGGGS
60 70 80 90 100
RLEKQSLTHG SSGYINSSGS LRGNASTSSY RRAHSPASTL PNSPGSTFER
110 120 130 140 150
KTHVTRHGTY EGSSSGNSSP EYPRKEFASS STRGRSQTRE SEIRVRLQSA
160 170 180 190 200
SPSTRWTELD DVKRLLKGSR SASVSPTRNS SNTLPIPKKG TVETKVVTAS
210 220 230 240 250
SQSVSGTYDT TILDANLPSH VWSSTLPAGS SMGTYHNNIT TQSSSLLNTN
260 270 280 290 300
AYSAGSVFGV PNNMASCSAT LQPGISTSSS VFGMQNNLAP SSSTLSHGMA
310 320 330 340 350
ATSTAYGVKK NMPQSPTAVS TGVSTSAAST TNVQNDDLLH KDCKFLILEK
360 370 380 390 400
DNTPAKKEME LLIMTKDSGK VFTASPASVA ATSFSEDTLK KEKQAAYTDT
410 420 430 440 450
YLVSEANGDV KTVTAKGNGA SADIHGYDHR RGGGGGGGSG GALGSGAAGG
460 470 480 490 500
GGKGSWGAAP TWCPCGSWCS WWKWLLGLLL TWLLLLGLLF GLIALAEEVR
510 520 530 540 550
KLKARVEELE KMRGRLSYNE KMERSSQDSV QGVAPRLGEG LGKSELDDYN
560 570 580 590 600
LEDVWQFMKV RLMTEQENGN LRGSPGPKGD MGVQGPKGDR GFPGTPGIPG
610 620 630 640 650
PLGHQGPEGP KGQKGNVGEP GMEGPMGQRG REGPMGPRGE PGPPGFGEKG
660 670 680 690 700
DRGDAGKPGI PGPPGVPGSV GPKGSIGPQG LRGEVGLPGI KGDKGPMGPP
710 720 730 740 750
GPKGDQGEKG PRGLTGEPGL KGLPGAVGEP GAKGAMGPAG PDGHQGPRGE
760 770 780 790 800
QGLPGMPGTR GLPGPSGDPG KPGLTGPQGP QGIPGTPGRP GVKGEPGAPG
810 820 830 840 850
KIMTSEGSST ITVPGPPGPP GAMGPPGPPG APGPVGPAGL PGQQGPRGEP
860 870 880 890 900
GLAGESFMGS SSSFSEVLST QGIDLRGPPG PPGPPGPPGE GLPGPPGPPG
910 920 930 940 950
SLLTSSETFF SGPPGPPGPP GPKGDQGPPG PRGHQGERGF PGLSGSGSSS
960 970 980 990 1000
LGLNLQGPPG PPGPQGPKGD KGDPGVPGAP GIPGGPSRGG SSSSTTFMQG
1010 1020 1030 1040 1050
PPGPPGPPGP PGSLSSSGLE IQQYISDYMQ SDSIRPYLSG VQGPPGPPGP
1060 1070 1080 1090 1100
PGPVTTITGE TFNYSELASL VVSYLQTSGY NIGTSSTSIS SEDILAALRR
1110 1120 1130 1140 1150
DDVRQYLQQY LMPQGAGGDW FLQSLDYAEL SNRILSYMSS TGVSIGLPGP
1160 1170 1180 1190 1200
PGPPGLPGTS YEELLSLLQG SEFRGIVGPP GPPGPPGLPG SSWSSISTED
1210 1220 1230 1240 1250
LSSYLQTAGL SSIPGPPGPP GPPGPRGPPG ISGALATYAA ENSDSFRSEL
1260 1270 1280 1290 1300
ISYLTSPDVR SFIVGPPGPP GPQGPPGDTR LVSTDSSYSR SGSSSSFSRD
1310 1320 1330 1340 1350
TSYSSSMGIG GASGGSLGEA GAFGMDMGRG YGAAAESGMY GGNGRFGTSF
1360 1370 1380 1390 1400
AGGLDYNELA VRVSESLQRQ GLLQGMAYTV QGPPGRPGPQ GPPGISKIFS
1410 1420 1430 1440 1450
AYSNVTEDLM DFFRTYGAIP GPPGQKGEMG IPGPKGERGP AGPPGPRGHK
1460 1470
GEKGDKGDQF YIGRRRRSIA VKP
Length:1,473
Mass (Da):149,154
Last modified:August 21, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDAF3B1BAECD28177
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BC149236 mRNA Translation: AAI49237.1

NCBI Reference Sequences

More...
RefSeqi
NP_001095450.1, NM_001101980.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
513804

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bta:513804

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC149236 mRNA Translation: AAI49237.1
RefSeqiNP_001095450.1, NM_001101980.1

3D structure databases

SMRiA6QPB3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000013271

Proteomic databases

PaxDbiA6QPB3
PeptideAtlasiA6QPB3
PRIDEiA6QPB3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi513804
KEGGibta:513804

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
1308
VGNCiVGNC:27558 COL17A1

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
HOGENOMiHOG000111885
InParanoidiA6QPB3
KOiK07603
OMAiWSSISME
OrthoDBi718661at2759
TreeFamiTF332289

Enzyme and pathway databases

ReactomeiR-BTA-1650814 Collagen biosynthesis and modifying enzymes
R-BTA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-BTA-2022090 Assembly of collagen fibrils and other multimeric structures
R-BTA-446107 Type I hemidesmosome assembly
R-BTA-8948216 Collagen chain trimerization

Gene expression databases

BgeeiENSBTAG00000002430 Expressed in 5 organ(s), highest expression level in colon
ExpressionAtlasiA6QPB3 differential

Family and domain databases

InterProiView protein in InterPro
IPR008160 Collagen
PfamiView protein in Pfam
PF01391 Collagen, 5 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCOHA1_BOVIN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A6QPB3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: August 21, 2007
Last modified: May 8, 2019
This is version 77 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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