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Entry version 110 (07 Apr 2021)
Sequence version 2 (26 Feb 2008)
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Protein

Trafficking protein particle complex subunit 13

Gene

TRAPPC13

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

Pathway Commons web resource for biological pathway data

More...
PathwayCommonsi
A5PLN9

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-HSA-8876198, RAB GEFs exchange GTP for GDP on RABs

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Trafficking protein particle complex subunit 13
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TRAPPC13
Synonyms:C5orf44
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Human Gene Nomenclature Database

More...
HGNCi
HGNC:25828, TRAPPC13

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_A5PLN9

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
HostDB:ENSG00000113597.17

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Open Targets

More...
OpenTargetsi
ENSG00000113597

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...
PharmGKBi
PA162380280

Miscellaneous databases

Pharos NIH Druggable Genome Knowledgebase

More...
Pharosi
A5PLN9, Tdark

Genetic variation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
TRAPPC13

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003215471 – 417Trafficking protein particle complex subunit 13Add BLAST417

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
A5PLN9

MassIVE - Mass Spectrometry Interactive Virtual Environment

More...
MassIVEi
A5PLN9

MaxQB - The MaxQuant DataBase

More...
MaxQBi
A5PLN9

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A5PLN9

PeptideAtlas

More...
PeptideAtlasi
A5PLN9

PRoteomics IDEntifications database

More...
PRIDEi
A5PLN9

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
744 [A5PLN9-1]
745 [A5PLN9-2]
746 [A5PLN9-4]
747 [A5PLN9-5]
748 [A5PLN9-7]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
A5PLN9

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
A5PLN9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSG00000113597, Expressed in caudate nucleus and 221 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A5PLN9, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
A5PLN9, HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
ENSG00000113597, Low tissue specificity

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the multisubunit TRAPP (transport protein particle) complex.

1 Publication

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
123063, 85 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-4749, TRAPP II complex

Database of interacting proteins

More...
DIPi
DIP-48284N

Protein interaction database and analysis system

More...
IntActi
A5PLN9, 26 interactors

Molecular INTeraction database

More...
MINTi
A5PLN9

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000409231

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
A5PLN9, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the TRAPPC13 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2625, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000015280

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_027041_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A5PLN9

Identification of Orthologs from Complete Genome Data

More...
OMAi
FKFQVVK

Database of Orthologous Groups

More...
OrthoDBi
1608721at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A5PLN9

TreeFam database of animal gene trees

More...
TreeFami
TF314898

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR010378, TRAPPC13

The PANTHER Classification System

More...
PANTHERi
PTHR13134, PTHR13134, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06159, DUF974, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (5+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 5 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 5 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: A5PLN9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEVNPPKQEH LLALKVMRLT KPTLFTNIPV TCEEKDLPGD LFNQLMRDDP
60 70 80 90 100
STVNGAEVLM LGEMLTLPQN FGNIFLGETF SSYISVHNDS NQVVKDILVK
110 120 130 140 150
ADLQTSSQRL NLSASNAAVA ELKPDCCIDD VIHHEVKEIG THILVCAVSY
160 170 180 190 200
TTQAGEKMYF RKFFKFQVLK PLDVKTKFYN AESDLSSVTD EVFLEAQIQN
210 220 230 240 250
MTTSPMFMEK VSLEPSIMYN VTELNSVSQA GECVSTFGSR AYLQPMDTRQ
260 270 280 290 300
YLYCLKPKNE FAEKAGIIKG VTVIGKLDIV WKTNLGERGR LQTSQLQRMA
310 320 330 340 350
PGYGDVRLSL EAIPDTVNLE EPFHITCKIT NCSERTMDLV LEMCNTNSIH
360 370 380 390 400
WCGISGRQLG KLHPSSSLCL ALTLLSSVQG LQSISGLRLT DTFLKRTYEY
410
DDIAQVCVVS SAIKVES
Length:417
Mass (Da):46,524
Last modified:February 26, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7E80D7B11511DC6E
GO
Isoform 2 (identifier: A5PLN9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     183-188: Missing.

Show »
Length:411
Mass (Da):45,935
Checksum:i4F8957F04D4ADDC8
GO
Isoform 3 (identifier: A5PLN9-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     183-188: Missing.
     332-332: C → CS

Show »
Length:412
Mass (Da):46,022
Checksum:i4C9D6D1C407AD42B
GO
Isoform 4 (identifier: A5PLN9-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     332-332: C → CS

Show »
Length:418
Mass (Da):46,611
Checksum:iA70C649C01228F2A
GO
Isoform 5 (identifier: A5PLN9-7) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     183-188: Missing.
     300-315: APGYGDVRLSLEAIPD → VSLEKTSLGFWCVKDR
     316-417: Missing.

Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.Curated
Show »
Length:309
Mass (Da):34,884
Checksum:iD7AE8E83451A6FBE
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
D6RB83D6RB83_HUMAN
Trafficking protein particle comple...
TRAPPC13
81Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H0YBF8H0YBF8_HUMAN
Trafficking protein particle comple...
TRAPPC13
53Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH47475 differs from that shown. Wrong choice of CDS.Curated
The sequence BAB14633 differs from that shown. Reason: Erroneous termination. Truncated C-terminus.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti177K → R in AAY88966 (Ref. 6) Curated1
Sequence conflicti255L → P in AAY88966 (Ref. 6) Curated1
Sequence conflicti403I → V in AAI42995 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_038356183 – 188Missing in isoform 2, isoform 3 and isoform 5. 2 Publications6
Alternative sequenceiVSP_038357300 – 315APGYG…EAIPD → VSLEKTSLGFWCVKDR in isoform 5. 1 PublicationAdd BLAST16
Alternative sequenceiVSP_038358316 – 417Missing in isoform 5. 1 PublicationAdd BLAST102
Alternative sequenceiVSP_038359332C → CS in isoform 3 and isoform 4. 2 Publications1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL713699 mRNA Translation: CAD28498.1
BX641157 mRNA Translation: CAE46070.1
AK023673 mRNA Translation: BAB14633.1 Sequence problems.
AC008560 Genomic DNA No translation available.
CH471137 Genomic DNA Translation: EAW51346.1
BC047475 mRNA Translation: AAH47475.1 Sequence problems.
BC117128 mRNA Translation: AAI17129.1
BC142994 mRNA Translation: AAI42995.1
DQ088673 mRNA Translation: AAY88966.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS47221.1 [A5PLN9-5]
CCDS47222.1 [A5PLN9-1]
CCDS47223.1 [A5PLN9-2]
CCDS58950.1 [A5PLN9-4]

NCBI Reference Sequences

More...
RefSeqi
NP_001087224.1, NM_001093755.1 [A5PLN9-5]
NP_001087225.1, NM_001093756.1 [A5PLN9-2]
NP_001230666.1, NM_001243737.1 [A5PLN9-4]
NP_079217.2, NM_024941.3 [A5PLN9-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000231526; ENSP00000231526; ENSG00000113597 [A5PLN9-2]
ENST00000399438; ENSP00000382367; ENSG00000113597 [A5PLN9-1]
ENST00000438419; ENSP00000409231; ENSG00000113597 [A5PLN9-5]
ENST00000505553; ENSP00000423405; ENSG00000113597 [A5PLN9-4]

Database of genes from NCBI RefSeq genomes

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GeneIDi
80006

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hsa:80006

UCSC genome browser

More...
UCSCi
uc003jtz.5, human [A5PLN9-1]

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL713699 mRNA Translation: CAD28498.1
BX641157 mRNA Translation: CAE46070.1
AK023673 mRNA Translation: BAB14633.1 Sequence problems.
AC008560 Genomic DNA No translation available.
CH471137 Genomic DNA Translation: EAW51346.1
BC047475 mRNA Translation: AAH47475.1 Sequence problems.
BC117128 mRNA Translation: AAI17129.1
BC142994 mRNA Translation: AAI42995.1
DQ088673 mRNA Translation: AAY88966.1
CCDSiCCDS47221.1 [A5PLN9-5]
CCDS47222.1 [A5PLN9-1]
CCDS47223.1 [A5PLN9-2]
CCDS58950.1 [A5PLN9-4]
RefSeqiNP_001087224.1, NM_001093755.1 [A5PLN9-5]
NP_001087225.1, NM_001093756.1 [A5PLN9-2]
NP_001230666.1, NM_001243737.1 [A5PLN9-4]
NP_079217.2, NM_024941.3 [A5PLN9-1]

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi123063, 85 interactors
ComplexPortaliCPX-4749, TRAPP II complex
DIPiDIP-48284N
IntActiA5PLN9, 26 interactors
MINTiA5PLN9
STRINGi9606.ENSP00000409231

PTM databases

iPTMnetiA5PLN9
PhosphoSitePlusiA5PLN9

Genetic variation databases

BioMutaiTRAPPC13

Proteomic databases

jPOSTiA5PLN9
MassIVEiA5PLN9
MaxQBiA5PLN9
PaxDbiA5PLN9
PeptideAtlasiA5PLN9
PRIDEiA5PLN9
ProteomicsDBi744 [A5PLN9-1]
745 [A5PLN9-2]
746 [A5PLN9-4]
747 [A5PLN9-5]
748 [A5PLN9-7]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
43978, 47 antibodies

The DNASU plasmid repository

More...
DNASUi
80006

Genome annotation databases

EnsembliENST00000231526; ENSP00000231526; ENSG00000113597 [A5PLN9-2]
ENST00000399438; ENSP00000382367; ENSG00000113597 [A5PLN9-1]
ENST00000438419; ENSP00000409231; ENSG00000113597 [A5PLN9-5]
ENST00000505553; ENSP00000423405; ENSG00000113597 [A5PLN9-4]
GeneIDi80006
KEGGihsa:80006
UCSCiuc003jtz.5, human [A5PLN9-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
80006

GeneCards: human genes, protein and diseases

More...
GeneCardsi
TRAPPC13
HGNCiHGNC:25828, TRAPPC13
HPAiENSG00000113597, Low tissue specificity
neXtProtiNX_A5PLN9
OpenTargetsiENSG00000113597
PharmGKBiPA162380280
VEuPathDBiHostDB:ENSG00000113597.17

GenAtlas: human gene database

More...
GenAtlasi
Search...

Phylogenomic databases

eggNOGiKOG2625, Eukaryota
GeneTreeiENSGT00390000015280
HOGENOMiCLU_027041_0_0_1
InParanoidiA5PLN9
OMAiFKFQVVK
OrthoDBi1608721at2759
PhylomeDBiA5PLN9
TreeFamiTF314898

Enzyme and pathway databases

PathwayCommonsiA5PLN9
ReactomeiR-HSA-8876198, RAB GEFs exchange GTP for GDP on RABs

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
80006, 166 hits in 1005 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
TRAPPC13, human

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

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GenomeRNAii
80006
PharosiA5PLN9, Tdark

Protein Ontology

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PROi
PR:A5PLN9
RNActiA5PLN9, protein

Gene expression databases

BgeeiENSG00000113597, Expressed in caudate nucleus and 221 other tissues
ExpressionAtlasiA5PLN9, baseline and differential
GenevisibleiA5PLN9, HS

Family and domain databases

InterProiView protein in InterPro
IPR010378, TRAPPC13
PANTHERiPTHR13134, PTHR13134, 1 hit
PfamiView protein in Pfam
PF06159, DUF974, 1 hit

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTPC13_HUMAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A5PLN9
Secondary accession number(s): Q17RZ9
, Q49A23, Q4JHG0, Q6MZG4, Q8TCM2, Q9H8I3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: February 26, 2008
Last modified: April 7, 2021
This is version 110 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries
  2. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  3. SIMILARITY comments
    Index of protein domains and families
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