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Entry version 61 (16 Oct 2019)
Sequence version 1 (10 Jul 2007)
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Protein
Submitted name:

Splicing factor 3B subunit 1, putative

Gene

PVX_119560

Organism
Plasmodium vivax (strain Salvador I)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Splicing factor 3B subunit 1, putativeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:PVX_119560Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPlasmodium vivax (strain Salvador I)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri126793 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiidaePlasmodiumPlasmodium (Plasmodium)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008333 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 8

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
PlasmoDB:PVX_119560

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini264 – 425SF3b1InterPro annotationAdd BLAST162

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 27DisorderedSequence analysisAdd BLAST27
Regioni162 – 253DisorderedSequence analysisAdd BLAST92

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 24PolyampholyteSequence analysisAdd BLAST24
Compositional biasi216 – 232PolyampholyteSequence analysisAdd BLAST17

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000166737

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A5KBA4

KEGG Orthology (KO)

More...
KOi
K12828

Identification of Orthologs from Complete Genome Data

More...
OMAi
EEETHYS

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR015016 SF3b_su1
IPR038737 SF3b_su1-like

The PANTHER Classification System

More...
PANTHERi
PTHR12097 PTHR12097, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08920 SF3b1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A5KBA4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGAKRSEYDA GKREGGKKHN YGHEEMNGGT LGGAHGWGRL GGEVQYDLEI
60 70 80 90 100
ETHLEEEDSA NRVGSGPVGT VAPVSGARRN HINVGTLKDE VVQNDLNNDH
110 120 130 140 150
LDDEALGLVK DKSIKRRENE FQRRKYDYML SPGRADPFGE KSPSPGERTY
160 170 180 190 200
ADVMMGINNE SHKRKLASSA SSSAAKGAAK EADAGGNRKM RWGVAEGDGA
210 220 230 240 250
GRESGEVATS SRANEGVKKE QGKSKWDVLS EEESKSTSFG NMPTPAPAKW
260 270 280 290 300
VDTPLVLNDG GAVKRKKISR WDKVGEGTTA SAADGLAQSD LMKTPRVVAA
310 320 330 340 350
GGVALGGMAA GGMAAGGATP GGLLKTPYLV PGSGNFVNTP YVVNQLGNAP
360 370 380 390 400
AMFTPMMTPG VASLATDSII RMKIKNEMEI RNRPLTDEDL DELLPSEGYE
410 420 430 440 450
IVQPPEEYEA IRRNKLKAFF KTVASAAGTP LLVGSGATGV ATSLQGDKTG
460 470 480 490 500
EHPPGGLQTL YANNSRMDGT LLSGTPFYEL PTATATQLKD AEGGGDAQTL
510 520 530 540 550
LQSRQLEITN PQLLSELKYV QLKSEDFIYF SKLFQTVDES DLSQDELKER
560 570 580 590 600
KLMILLLKIK NGTPSVRRTA LRAITDKVKE LGPETLFNLI LPLMMHNTLE
610 620 630 640 650
DQERHLLVKV IDRILFKLDD LVRPYVHKIL VVIEPLLIDE DYYARVEGRE
660 670 680 690 700
IISNLAKAAG LATMIGIMRP DIDHPDEYVR NTTARAFAVV ASALGIPSLI
710 720 730 740 750
LFLKAVCQSK KNWEARHTGI KIVQQIAILM GCAVLPHLRQ LVSIVAHGLH
760 770 780 790 800
DEQQKVKTIT ALAIAALAEA AAPYGIEAFD SVLRPLWKGI TEHRGKVLAA
810 820 830 840 850
FLKAIGLIIP LMDPYHASYY TREVMVILIN EFNSPDEEMK KVVLKCVKQC
860 870 880 890 900
IQTEGIERDY INQEVVNPFF EKFWVLRSSH DKRNLHLIVE TTVEISNKIG
910 920 930 940 950
GAVVIARIVD DLKDPSEQFR KMVMQTIQSI VNNQGVDDID QTLEEQLIDG
960 970 980 990 1000
ILYAFQEQAS EDYYVLLNSF DAIVNKLQIR MKPYLPQIAG IIRWRLNTPL
1010 1020 1030 1040 1050
PKIRQQSAEL IARIANLMHL CEEHQMLGHL ALYLYEYLGE EYPEVLGNII
1060 1070 1080 1090 1100
GALKSIVVVL GVQNMTPPIK DLLPRVTPIL KNRHEKVQEN VIDLIGIIAD
1110 1120 1130 1140 1150
KGGDLVSPKE WDRICFDLIE LLKSNKKLIR RATIQTFGYI ARTIGPFEVL
1160 1170 1180 1190 1200
TVLLNNLRVQ ERQLRVCTTV AIAIVADTCL PYSVLAALMN EYRTQDLNVQ
1210 1220 1230 1240 1250
NGVLKALSFM FEYIGEIAKD YVYAVVPLLE HALMDRDLVH RQIATWACKH
1260 1270 1280 1290 1300
LALGCFGLNR EDALIHLLNY VWPNIFETSP HLIQAVIDSI DGFRVALGPA
1310 1320 1330 1340 1350
IIFQYLVQGI FHPSRKVREI YWKIYNNVYI GHQDSLVPVY PPFERLADSN
1360
FARDELRYTL
Length:1,360
Mass (Da):150,834
Last modified:July 10, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0419C44E2F5A89BC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAKM01000017 Genomic DNA Translation: EDL43382.1

NCBI Reference Sequences

More...
RefSeqi
XP_001613109.1, XM_001613059.1

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
EDL43382; EDL43382; PVX_119560

Database of genes from NCBI RefSeq genomes

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GeneIDi
5472363

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pvx:PVX_119560

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAKM01000017 Genomic DNA Translation: EDL43382.1
RefSeqiXP_001613109.1, XM_001613059.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblProtistsiEDL43382; EDL43382; PVX_119560
GeneIDi5472363
KEGGipvx:PVX_119560

Organism-specific databases

EuPathDBiPlasmoDB:PVX_119560

Phylogenomic databases

HOGENOMiHOG000166737
InParanoidiA5KBA4
KOiK12828
OMAiEEETHYS

Family and domain databases

Gene3Di1.25.10.10, 2 hits
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR015016 SF3b_su1
IPR038737 SF3b_su1-like
PANTHERiPTHR12097 PTHR12097, 1 hit
PfamiView protein in Pfam
PF08920 SF3b1, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA5KBA4_PLAVS
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A5KBA4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 10, 2007
Last sequence update: July 10, 2007
Last modified: October 16, 2019
This is version 61 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
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