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Protein
Submitted name:

SWI/SNF nucleosome remodeling complex component

Gene

swsn-9

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SWI/SNF nucleosome remodeling complex componentImported
Gene namesi
Name:swsn-9Imported
ORF Names:C01H6.7Imported, CELE_C01H6.7Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC01H6.7b ; CE40891 ; WBGene00007256 ; swsn-9

PTM / Processingi

Proteomic databases

PeptideAtlasiA5JYT2

Expressioni

Gene expression databases

BgeeiWBGene00007256 Expressed in 5 organ(s), highest expression level in material anatomical entity

Interactioni

Protein-protein interaction databases

IntActiA5JYT2, 2 interactors

Structurei

3D structure databases

ProteinModelPortaliA5JYT2
SMRiA5JYT2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini172 – 234BromoInterPro annotationAdd BLAST63

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili469 – 489Sequence analysisAdd BLAST21

Keywords - Domaini

BromodomainPROSITE-ProRule annotationSAAS annotation, Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1828 Eukaryota
ENOG410XRRI LUCA
GeneTreeiENSGT00530000063939
HOGENOMiHOG000280704

Family and domain databases

Gene3Di1.20.920.10, 1 hit
InterProiView protein in InterPro
IPR001487 Bromodomain
IPR036427 Bromodomain-like_sf
IPR021900 DUF3512
PfamiView protein in Pfam
PF00439 Bromodomain, 1 hit
PF12024 DUF3512, 1 hit
PRINTSiPR00503 BROMODOMAIN
SMARTiView protein in SMART
SM00297 BROMO, 1 hit
SUPFAMiSSF47370 SSF47370, 1 hit
PROSITEiView protein in PROSITE
PS50014 BROMODOMAIN_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A5JYT2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPEGESRRSM VGIPPTRRAR GGNTPSTATP VVPRTSARAA KRVKKEEPEE
60 70 80 90 100
EEDYKNNNSD PEKSEEDESE ESGDEMTTPS RKTPGGGAGG RKKKRAPLTD
110 120 130 140 150
YHLKKKKILA RKAARDAEKE KEVEPEVQEE VPKEPTPPPP RKAPSFSSYL
160 170 180 190 200
PIQLMQDHIL RKLVEKDPEQ YFAFPVTPSM APDYRDIIKT PMDLQTIREN
210 220 230 240 250
IEDGKYASLP AMKEDCELIV SNAFQYNQPN TVFYLAAKRL SNLIAYYFGE
260 270 280 290 300
QYLRFLFHSL PMANKIPFEI VGIRPLAPVP KERTMNKRKA VVKDGMTSED
310 320 330 340 350
CLQVADPKVR ERLSAKLPEA NNPKNKKMGK LGFLSEKDGT VVLNVVAGDS
360 370 380 390 400
EDGKLENNAP RRVTIGDIVG PLEEGTPGMI QMADHRLFSQ APVNYLNYGP
410 420 430 440 450
YSSFAPMYDS TWATMTKEDT DLFLRTYGDK SNASDVMSMR RFVGDCPEFS
460 470 480 490 500
EIIGSLLDTL TDGEHSKTMK ELENAGKEVK EEVDNDEYKN ETVLSLIDDV
510 520 530 540 550
SSISNLGIET GFLNDIRQQV LVPAVESNIE NNIPEFMNEV NHMNVQQQLN
560 570 580
HSGQKVKDLA HIQEHRLVQQ PPPMIINIWL IK
Length:582
Mass (Da):65,508
Last modified:June 26, 2007 - v1
Checksum:iA63E8A1E42458F94
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q17581Q17581_CAEEL
SWI/SNF nucleosome remodeling compl...
swsn-9 C01H6.7, CELE_C01H6.7
636Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CAN86573.1
RefSeqiNP_001122414.1, NM_001128942.3
UniGeneiCel.17216

Genome annotation databases

EnsemblMetazoaiC01H6.7b.1; C01H6.7b.1; WBGene00007256
C01H6.7b.2; C01H6.7b.2; WBGene00007256
GeneIDi172461
UCSCiC01H6.7 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CAN86573.1
RefSeqiNP_001122414.1, NM_001128942.3
UniGeneiCel.17216

3D structure databases

ProteinModelPortaliA5JYT2
SMRiA5JYT2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA5JYT2, 2 interactors

Proteomic databases

PeptideAtlasiA5JYT2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC01H6.7b.1; C01H6.7b.1; WBGene00007256
C01H6.7b.2; C01H6.7b.2; WBGene00007256
GeneIDi172461
UCSCiC01H6.7 c. elegans

Organism-specific databases

CTDi172461
WormBaseiC01H6.7b ; CE40891 ; WBGene00007256 ; swsn-9

Phylogenomic databases

eggNOGiKOG1828 Eukaryota
ENOG410XRRI LUCA
GeneTreeiENSGT00530000063939
HOGENOMiHOG000280704

Gene expression databases

BgeeiWBGene00007256 Expressed in 5 organ(s), highest expression level in material anatomical entity

Family and domain databases

Gene3Di1.20.920.10, 1 hit
InterProiView protein in InterPro
IPR001487 Bromodomain
IPR036427 Bromodomain-like_sf
IPR021900 DUF3512
PfamiView protein in Pfam
PF00439 Bromodomain, 1 hit
PF12024 DUF3512, 1 hit
PRINTSiPR00503 BROMODOMAIN
SMARTiView protein in SMART
SM00297 BROMO, 1 hit
SUPFAMiSSF47370 SSF47370, 1 hit
PROSITEiView protein in PROSITE
PS50014 BROMODOMAIN_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA5JYT2_CAEEL
AccessioniPrimary (citable) accession number: A5JYT2
Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2007
Last sequence update: June 26, 2007
Last modified: November 7, 2018
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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