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Entry version 65 (16 Oct 2019)
Sequence version 1 (12 Jun 2007)
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Protein

GH115_C domain-containing protein

Gene

Fjoh_3877

Organism
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
FJOH376686:G1G8T-4035-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
GH115 Glycoside Hydrolase Family 115

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
GH115_C domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Fjoh_3877Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (Cytophaga johnsonae)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri376686 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeFlavobacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006694 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

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STRINGi
376686.Fjoh_3877

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini669 – 834GH115_CInterPro annotationAdd BLAST166

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG4105CVY Bacteria
ENOG410XNPT LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000180457

Identification of Orthologs from Complete Genome Data

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OMAi
DQTHIGY

Database of Orthologous Groups

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OrthoDBi
166825at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
3.20.20.520, 1 hit
3.30.379.10, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR031924 GH115
IPR041437 GH115_C
IPR042301 GH115_sf
IPR029018 Hex-like_dom2

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF17829 GH115_C, 1 hit
PF15979 Glyco_hydro_115, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF55545 SSF55545, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A5FD33-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKSLSTWIAL LIICIYSPLK AAEPFITHEK SSNVIVLKEK SVQPSFFINT
60 70 80 90 100
TLDAGIMRAV YNLQSDFEKV TGSKPVILNQ NPADSSPLII IGMAGNSVID
110 120 130 140 150
DLIKQKKING KDLKGKNEKF IIQHVKNPFK GVEEAIVIAG SDKRGTIYGI
160 170 180 190 200
YELSRQIGVS PWYYWADVPV KKSETLYFIK GTYSDGEPAV KYRGIFLNDE
210 220 230 240 250
APALSGWAKK TFGGFNSKFY EKVFELLLRL KSNYMWPAMW GNAFYDDDPL
260 270 280 290 300
SGPLANEMGI IMGTSHHEPM ALAQTDWHRY IKKNNLPNVW DYSKNKTVLD
310 320 330 340 350
EFWKSGIVRS KNWEKLVTIG MRGDGDEAMS EGTNISLLEN IVKEQRRIIS
360 370 380 390 400
QETGQSTDKT PQVWALYKEV QDYYDQGMRV PDDVILLFCD DNWGNVRKLP
410 420 430 440 450
DLRKPLHKGG YGMYYHFDYV GGPRNSKWIN ISPIQRVWEQ MNLSYEHGVD
460 470 480 490 500
KVWIVNVGDL KPMEFPISFF LDMAWNPKKF NPQNLFEFTE KWAAEQFGEK
510 520 530 540 550
HSKEIAGFLN TYPKFNRRVT PEMLDSQTYS LENYNEFQNV VNDYKNLALD
560 570 580 590 600
AYRVYNDLPE EYKDAYFQLV LYPIDACSNL YEMYFAQALN KKLYKQKDIQ
610 620 630 640 650
ANYYADLVKT KFARDSVLQN KYNNEIANGK WPHMMDQMHI GYKNWFDTPK
660 670 680 690 700
NILPEIQYIT ASEKTERKVF VEKDGYVSIE VAHFSKVNDS KRIHWETIPD
710 720 730 740 750
FGKTKSGITT LPQNLYPDTK ENIFVEYEID FTSTGTFNVE LLLAPTLNFN
760 770 780 790 800
SNKGLRYEVS FDDEKPQLVN FNGKYRGELG KWQAEHMIHS LTSHQILKPG
810 820 830 840
RHTLRFRVLD PGIVLQKILI NTGGLKPSYL GAPESDRVSQ D
Length:841
Mass (Da):97,044
Last modified:June 12, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3091A3B1169CEF7A
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP000685 Genomic DNA Translation: ABQ06888.1

NCBI Reference Sequences

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RefSeqi
WP_012025854.1, NZ_MUGZ01000020.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABQ06888; ABQ06888; Fjoh_3877

Database of genes from NCBI RefSeq genomes

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GeneIDi
31766798

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
fjo:Fjoh_3877

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000685 Genomic DNA Translation: ABQ06888.1
RefSeqiWP_012025854.1, NZ_MUGZ01000020.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi376686.Fjoh_3877

Protein family/group databases

CAZyiGH115 Glycoside Hydrolase Family 115

Genome annotation databases

EnsemblBacteriaiABQ06888; ABQ06888; Fjoh_3877
GeneIDi31766798
KEGGifjo:Fjoh_3877

Phylogenomic databases

eggNOGiENOG4105CVY Bacteria
ENOG410XNPT LUCA
HOGENOMiHOG000180457
OMAiDQTHIGY
OrthoDBi166825at2

Enzyme and pathway databases

BioCyciFJOH376686:G1G8T-4035-MONOMER

Family and domain databases

Gene3Di3.20.20.520, 1 hit
3.30.379.10, 1 hit
InterProiView protein in InterPro
IPR031924 GH115
IPR041437 GH115_C
IPR042301 GH115_sf
IPR029018 Hex-like_dom2
PfamiView protein in Pfam
PF17829 GH115_C, 1 hit
PF15979 Glyco_hydro_115, 1 hit
SUPFAMiSSF55545 SSF55545, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA5FD33_FLAJ1
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A5FD33
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: October 16, 2019
This is version 65 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteomeImported
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Main funding by: National Institutes of Health

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