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UniProtKB - A5B9A8 (A5B9A8_VITVI)

Entry version 53 (02 Jun 2021)
Sequence version 1 (12 Jun 2007)
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Protein

BHLH domain-containing protein

Gene

VITISV_034321

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
BHLH domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:VITISV_034321Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVitis vinifera (Grape)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri29760 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › Vitales › Vitaceae › Viteae › Vitis

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		A5B9A8, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini730 – 779BHLHInterPro annotationAdd BLAST50

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni628 – 688DisorderedSequence analysisAdd BLAST61
Regioni709 – 747DisorderedSequence analysisAdd BLAST39

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi628 – 654Polar residuesSequence analysisAdd BLAST27
Compositional biasi664 – 688Polar residuesSequence analysisAdd BLAST25
Compositional biasi720 – 747Basic and acidic residuesSequence analysisAdd BLAST28

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011598, bHLH_dom
IPR033260, LHW
IPR043561, LHW-like
IPR025610, MYC/MYB_N

The PANTHER Classification System

More...PANTHERi		PTHR46196, PTHR46196, 2 hits
PTHR46196:SF4, PTHR46196:SF4, 2 hits

Pfam protein domain database

More...Pfami		View protein in Pfam
PF14215, bHLH-MYC_N, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50888, BHLH, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A5B9A8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGFLLKEALK SLCGVNQWSY AVFWKIGCQN PKLLIWEECH CEFIPSSGLP 
        60         70         80         90        100
HGSGMENSEV PFEDWEGCWV XPETRISQLD GQAVESIYFL VNKMMMNNQV 
       110        120        130        140        150
NIVGEGIVGR AAFTGKHQWI LSENYTRDAH PPEVLNEVHH QFSAGMQTVA 
       160        170        180        190        200
VIPVLPHGVI QFGSSLAIME NAGFVNDVKS LILQLGCVPG ALLSESYAIK 
       210        220        230        240        250
ETSQNIGEPI SVAASIYGDP SRNYEVTNSS PFIADGCDQQ SNSSQASRLV 
       260        270        280        290        300
GQPSHSIMRQ IQDNQPINAS TFHSPNLIQT LVKSHADQCQ QKLPSVMKPK 
       310        320        330        340        350
LSFRSQLESE VAKAEVITSN PDVWLNRHGV SYNARFGFNH QPSVGPSGSS 
       360        370        380        390        400
ASNPRLMENQ VLSDAGARGH INNNLSGPSC FLSSQLRTNG GLDSDSHKSS 
       410        420        430        440        450
DIAPFLGEGV RMGNYLRSIS IPPSVLXTNK SADISLSCTQ LTGIGLQNAD 
       460        470        480        490        500
SLKSEVIPLS DQVDHLNISH MLSGDSDHRH HLTNEKCTEK ELVPRRQKIE 
       510        520        530        540        550
NDLFQALGIP LTRADAQMIL SEHVPDFLHE FPKPENGSQT PRSKNAIHED 
       560        570        580        590        600
TCVRPASGDD LFDILGVDFK SKLFNGYGND SVIDGPGISD SGIFVGSDAD 
       610        620        630        640        650
HLLEAVVSRI HSATKQSSDD NVSCRTTLTK ISSSSVPSTS PTYGRGNMSD 
       660        670        680        690        700
QMQRNLFGLP PEKSGTMGSS SFRSGCSKDE RGNCSQGSSI YGSQISSWVE 
       710        720        730        740        750
QGHSLKRESS VSTAYSKRPD EIGKSNRKRX KPGENPRPRP KDRQMIQDRV 
       760        770        780        790        800
KELREIVPNG AKCSIDALLE RTIKHMLFLQ SVMKHADKLK QTGESKIINK 
       810        820        830        840        850
EGGLHLKDNF EGGATWAFEV GSQSMVCPII VEDLNPPRQM LVEMLCEERG 
       860        870        880        890        900
FFLEIADIIR GMGLTILKGV METRNDKIWA RFTVEVTLLI FTVSLAKILR 
       910        920        930        940        950
SDEKANRDVT RMEIFISLVH LLEQTVKGST LSAHGIDNDN MMVHHSFHQA 
       960        970        980        990       1000
ASIPATGRAN LANASPVLVS YHELAVDEAD DANLKYLVIF HLMALSYTLA 
      1010       1020 
LEKCELLYVG MEVRXFSLED WND
Length:1,023
Mass (Da):112,556
Last modified:June 12, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i342E2CB3815DD0CA
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AM451103 Genomic DNA Translation: CAN76581.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM451103 Genomic DNA Translation: CAN76581.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

Gene expression databases

ExpressionAtlasiA5B9A8, baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR011598, bHLH_dom
IPR033260, LHW
IPR043561, LHW-like
IPR025610, MYC/MYB_N
PANTHERiPTHR46196, PTHR46196, 2 hits
PTHR46196:SF4, PTHR46196:SF4, 2 hits
PfamiView protein in Pfam
PF14215, bHLH-MYC_N, 1 hit
PROSITEiView protein in PROSITE
PS50888, BHLH, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA5B9A8_VITVI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A5B9A8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: June 2, 2021
This is version 53 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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