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Protein
Submitted name:

Prpf3 protein

Gene

prpf3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • mRNA splicing, via spliceosome Source: InterPro
  • retina development in camera-type eye Source: ZFIN

Names & Taxonomyi

Protein namesi
Submitted name:
Prpf3 proteinImported
Gene namesi
Name:prpf3Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-040823-3 prpf3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Structurei

3D structure databases

ProteinModelPortaliA4QP06
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 87PWIInterPro annotationAdd BLAST87

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili142 – 162Sequence analysisAdd BLAST21
Coiled coili359 – 379Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2769 Eukaryota
ENOG410XQV0 LUCA
HOGENOMiHOG000205412
HOVERGENiHBG053699
KOiK12843

Family and domain databases

InterProiView protein in InterPro
IPR010541 DUF1115
IPR013881 Pre-mRNA_splic_Prp3
IPR027104 Prp3
IPR002483 PWI_dom
IPR036483 PWI_dom_sf
PANTHERiPTHR14212 PTHR14212, 1 hit
PfamiView protein in Pfam
PF06544 DUF1115, 1 hit
PF08572 PRP3, 1 hit
PF01480 PWI, 1 hit
SMARTiView protein in SMART
SM00311 PWI, 1 hit
SUPFAMiSSF101233 SSF101233, 1 hit
PROSITEiView protein in PROSITE
PS51025 PWI, 1 hit

Sequencei

Sequence statusi: Complete.

A4QP06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLPKREVDE LRPWVERTVK KVLGFSEPTV VTAALHCVGK GLDKRKTIDQ
60 70 80 90 100
LRPFLDDSAS SFVERLFEAL EESRNSRGSK GSGEKNRKRE LKEVFGDEME
110 120 130 140 150
GVKDVVSVES AVKKKRVPRF EEVEEPVVLP GPPTESPGML TKIQIKQMME
160 170 180 190 200
AATRQIEERK KQLSFAAPTP SSQSRLSASQ TDSSTPRSMN QAGGATQSIA
210 220 230 240 250
PSQAANFMND AIEKARKAAE LQAKIQSTLS MKPGILATVG NPGPHNMVAL
260 270 280 290 300
ANLHAMGIAP PKVEPREITK PTPLILDELG RTVDASGKEI ELTHRMPTLK
310 320 330 340 350
ANIRAVKREQ FRQQLKEKPS DDLESTSYFD PRVALAPALK PKKGFRFHEQ
360 370 380 390 400
GRFEKIAQRI RTKAQLEKLQ MEIAQAAKKT GIQASTKLAL IAPKKELGEG
410 420 430 440 450
EIPNIEWWDS YILPFHINLS AHTNLDEVEM HGVTNLVEHP TQMAPPVDTD
460 470 480 490 500
KPVTLGVYLT KKEQKKLRRQ TRREGQKEVQ EKVRLGLMPP PEPKVRISNL
510 520 530 540 550
MRVLGTEAVQ GPTKVEAHVR AQMAKRQKAH EEANAARKLT AEQRKEKKVK
560 570 580 590 600
KLKEDLSHGV HIAVYRIRNL HNPAKKFKVE ANANQLYLTG TVVLHKDVNI
610 620 630 640 650
VVVEGGPKAQ KKFKRLMLTR IKWDEPNSKR DEHHDDDESR RNNRCSLVWE
660 670 680 690
GTSKERNYGE VKFKQCPTEN MAREHFKKHG TEHYWDLALS QSVLETTDD
Length:699
Mass (Da):78,834
Last modified:May 15, 2007 - v1
Checksum:iF409DD48F853F974
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC139603 mRNA Translation: AAI39604.1
RefSeqiNP_991311.2, NM_205748.2
UniGeneiDr.75242

Genome annotation databases

GeneIDi403072
KEGGidre:403072

Similar proteinsi

Entry informationi

Entry nameiA4QP06_DANRE
AccessioniPrimary (citable) accession number: A4QP06
Entry historyiIntegrated into UniProtKB/TrEMBL: May 15, 2007
Last sequence update: May 15, 2007
Last modified: February 28, 2018
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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