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Entry version 82 (16 Oct 2019)
Sequence version 1 (17 Apr 2007)
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Protein

Nuclear-pore anchor

Gene

NUA

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of the nuclear pore complex. Acts as a docking site for activities required for desumoylation and mRNA export. Required for the proper expression or localization of a subset of miRNAs. Plays a role in meristematic cell division by interacting with spindle assembly checkpoint proteins.1 Publication4 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processmRNA transport, Protein transport, Translocation, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Nuclear-pore anchor2 Publications
Alternative name(s):
Protein TRANSLOCATED PROMOTER REGION1 Publication
Short name:
AtTPR
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NUA2 Publications
Synonyms:TPR1 Publication
Ordered Locus Names:At1g79280Imported
ORF Names:YUP8H12R.11, YUP8H12R.12, YUP8H12R.8, YUP8H12R.9Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G79280

The Arabidopsis Information Resource

More...
TAIRi
locus:2207390 AT1G79280

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Membrane, Nuclear pore complex, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Early flowering under both long and short days and pleiotropic alterations in shoot development and auxin signaling. Stunted primary root development in the absence of sucrose. Accumulation of nuclear poly(A)+ RNA and high-molecular weight SUMO conjugates.1 Publication2 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003959761 – 2093Nuclear-pore anchorAdd BLAST2093

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2022PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A4GSN8

PRoteomics IDEntifications database

More...
PRIDEi
A4GSN8

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
A4GSN8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Ubiquitous. Highest expression in the shoot apical region.2 Publications

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Not induced by vernalization.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
A4GSN8 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
A4GSN8 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the nuclear pore complex (NPC). The NPC has an eight-fold symmetrical structure comprising a central transport channel and two rings, the cytoplasmic and nuclear rings, to which eight filaments are attached. The cytoplasmic filaments have loose ends, while the nuclear filaments are joined in a distal ring, forming a nuclear basket. NPCs are highly dynamic in configuration and composition, and can be devided in 3 subcomplexes, the NUP62 subcomplex, the NUP107-160 subcomplex and the NUP93 subcomplex, containing approximately 30 different nucleoporin proteins.

Interacts with MAD1 and (via N-terminus) with ESD4.

1 Publication2 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
29487, 7 interactors

Protein interaction database and analysis system

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IntActi
A4GSN8, 1 interactor

STRING: functional protein association networks

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STRINGi
3702.AT1G79280.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
A4GSN8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili57 – 362Sequence analysisAdd BLAST306
Coiled coili439 – 529Sequence analysisAdd BLAST91
Coiled coili570 – 627Sequence analysisAdd BLAST58
Coiled coili688 – 1172Sequence analysisAdd BLAST485
Coiled coili1208 – 1252Sequence analysisAdd BLAST45
Coiled coili1293 – 1585Sequence analysisAdd BLAST293
Coiled coili1818 – 1849Sequence analysisAdd BLAST32

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1372 – 1557Lys-richAdd BLAST186
Compositional biasi1824 – 1961Glu-richAdd BLAST138
Compositional biasi2036 – 2086Arg-richAdd BLAST51

<p>This subsection of the ‘Family and domains’ section provides general information on the biological role of a domain. The term ‘domain’ is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The N-terminal domain is involved in RNA and SUMO homeostasis while the C-terminal part is required for nuclear pore association.

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4674 Eukaryota
ENOG410XSA1 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000254782

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A4GSN8

KEGG Orthology (KO)

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KOi
K09291

Identification of Orthologs from Complete Genome Data

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OMAi
KYDRVDP

Database of Orthologous Groups

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OrthoDBi
20957at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A4GSN8

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012929 TPR/MLP1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07926 TPR_MLP1_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: A4GSN8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MPLFMPDEEL ARLSSDAASV VAERADEYIR KIYAELDSVR AKADAASITA
60 70 80 90 100
EQTCSLLEQK YLSLSQDFSS LESQNAKLQS DFDDRLAELA QSQAQKHQLH
110 120 130 140 150
LQSIEKDGEV ERMSTEMSEL HKSKRQLMEL LEQKDAEISE KNSTIKSYLD
160 170 180 190 200
KIVKLTDTSS EKEARLAEAT AELARSQAMC SRLSQEKELT ERHAKWLDEE
210 220 230 240 250
LTAKVDSYAE LRRRHSDLES EMSAKLVDVE KNYIECSSSL NWHKERLREL
260 270 280 290 300
ETKIGSLQED LSSCKDAATT TEEQYTAELF TANKLVDLYK ESSEEWSRKA
310 320 330 340 350
GELEGVIKAL EARLSQVESS YKERLDKEVS TKQLLEKENG DLKQKLEKCE
360 370 380 390 400
AEIEKTRKTD ELNLIPFSNF TRRVDNSGTS NMIEESQAVI SKVPAGVSGT
410 420 430 440 450
ALAASLLRDG WSLAKIYEKY QEAVDAMRHE QLGRKEAEMI LQRVLSELEE
460 470 480 490 500
KAGFIQEERG EYERVVEAYC LVNQKLQDSV SEQSNMEKFI MELKADLRRR
510 520 530 540 550
ERENTLLQKD ISDLQKQVTI LLKECRDVQL RCGAARDDDE DDYPLLSDVE
560 570 580 590 600
MEMESEADKI ISEHLLKFKD INGLVEQNVK LRNLVRSLSE QIESRETELK
610 620 630 640 650
ETFEVDLKNK TDEASAKVAT VLKRAEEQGQ MIESLHTSVA MYKRLYEEEQ
660 670 680 690 700
KLHSSDSRSS DLSPAVVPGR KNFLHLLEDS EEATKRAQEK AFERIRILEE
710 720 730 740 750
DFAKARSEVI AIRSERDKLA MEANFAREKL EGIMKESERK REEMNSVLAR
760 770 780 790 800
NIEFSQLIID HQRKLRESSE SLHAAEEISR KLSMEVSVLK QEKELLSNAE
810 820 830 840 850
KRASDEVSAL SQRVYRLQAT LDTVQSTEEV REETRAAERR KQEEHIKQLQ
860 870 880 890 900
REWAEAKKEL QEERSNARDF TSDRNQTLNN AVMQVEEMGK ELANALKAVS
910 920 930 940 950
VAESRASVAE ARLSDLEKKI RSSDPKTLDM DSGGIVSLSD KEMSIELRTA
960 970 980 990 1000
KEEIEKLRGE VESSKSHMLQ YKSIAQVNET ALKQMESAHE NFRLEAEKRQ
1010 1020 1030 1040 1050
RSLEAELVSL RERVSELEND CIQKSEQLAT AAAGKEDALL SASAEIASLR
1060 1070 1080 1090 1100
EENLVKKSQI EAMNIQMSTL KNDLETEHEK WRVAQRNYER QVILLSETIQ
1110 1120 1130 1140 1150
ELTKTSQALA ALQEEASELR KLADARGIEN SELNAKWSEE KLMLEQQKNL
1160 1170 1180 1190 1200
AEKKYHELNE QNKLLHSRLE AKHLNSAEKN SRSGTISSGS TDSDHLEDSG
1210 1220 1230 1240 1250
LQRVVHYLRR TKEIAETEIS LMRQEKLRLQ SQLESALKMA ESARGSLTAE
1260 1270 1280 1290 1300
RASTRASLLT DDGIKSLQLQ VSEMNLLRES NMQLREENKH NFEKCQEMRE
1310 1320 1330 1340 1350
VAQKARMESE NFENLLKTKQ TELDLCMKEM EKLRMETDLH KKRVDELRET
1360 1370 1380 1390 1400
YRNIDIADYN RLKDEVRQLE EKLKAKDAHA EDCKKVLLEK QNKISLLEKE
1410 1420 1430 1440 1450
LTNCKKDLSE REKRLDDAQQ AQATMQSEFN KQKQELEKNK KIHYTLNMTK
1460 1470 1480 1490 1500
RKYEKEKDEL SKQNQSLAKQ LEEAKEEAGK RTTTDAVVEQ SVKEREEKEK
1510 1520 1530 1540 1550
RIQILDKYVH QLKDEVRKKT EDLKKKDEEL TKERSERKSV EKEVGDSLTK
1560 1570 1580 1590 1600
IKKEKTKVDE ELAKLERYQT ALTHLSEELE KLKHADGNLP EGTSAVQVLS
1610 1620 1630 1640 1650
GSILNDQAAA YVSAVEYFER VARSIASNSQ VSTKPTDMVT EPSSGIPAAE
1660 1670 1680 1690 1700
PSTMTRVPSS TPLIKSPVAT TQQLPKVASD NKEKRLISQK PSTEFRRPSG
1710 1720 1730 1740 1750
RRIVRPQLVK PEESPKVDVD MPEAEGTGDE GKQPAAHEPE SQVTTSVRPV
1760 1770 1780 1790 1800
QTLVRKRQAD SLVSEPQQDS LTQGETSSEI APPASKKAKG SESHPDTSEG
1810 1820 1830 1840 1850
ENLAKEPAID ELMDATTTTD GDNEETEAEN AEEKTEEYVE AQQDNEADEP
1860 1870 1880 1890 1900
VEESPTETET IPTEEESRDQ TEEENQEPLT DMESDKEEGE LDLDTLEDLE
1910 1920 1930 1940 1950
EGTDVASMMR SPEKEEVQPE TLATPTQSPS RMETAMEEAE TTIETPVEDD
1960 1970 1980 1990 2000
KTDEGGDAAE EAADIPNNAN DQQEAPETDI KPETSAATTS PVSTAPTTSS
2010 2020 2030 2040 2050
TLASAITSSG APETEDPKRA PSPGGGSSTI VTLADRAQMK RRERIANIVV
2060 2070 2080 2090
SRAPNPATRG ARGRTVNLRG GGRLLPRGGR APRGGRGQSP SPP
Length:2,093
Mass (Da):237,040
Last modified:April 17, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDC03ED0639506402
GO
Isoform 2 (identifier: A4GSN8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     942-942: E → EAALVIILDVVHKIQAGFRIGSA

Show »
Length:2,115
Mass (Da):239,314
Checksum:i79025C1953C64F5F
GO
Isoform 3 (identifier: A4GSN8-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     787-792: SVLKQE → VYHHPLK

Show »
Length:2,094
Mass (Da):237,231
Checksum:iC0FD032EDCEF0966
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAC17058 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAC17060 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAC17073 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAC17074 differs from that shown. Reason: Erroneous gene model prediction.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_057127787 – 792SVLKQE → VYHHPLK in isoform 3. 6
Alternative sequenceiVSP_057128942E → EAALVIILDVVHKIQAGFRI GSA in isoform 2. 1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
EF426860 mRNA Translation: ABO21684.1
AC002986 Genomic DNA Translation: AAC17058.1 Sequence problems.
AC002986 Genomic DNA Translation: AAC17060.1 Sequence problems.
AC002986 Genomic DNA Translation: AAC17073.1 Sequence problems.
AC002986 Genomic DNA Translation: AAC17074.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE36226.1
CP002684 Genomic DNA Translation: AEE36227.1
CP002684 Genomic DNA Translation: AEE36228.1
AF083705 mRNA Translation: AAN60264.1

Protein sequence database of the Protein Information Resource

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PIRi
T01025
T01026
T01028
T01029

NCBI Reference Sequences

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RefSeqi
NP_001185435.1, NM_001198506.1 [A4GSN8-3]
NP_001185436.1, NM_001198507.1 [A4GSN8-2]
NP_178048.2, NM_106578.3 [A4GSN8-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G79280.1; AT1G79280.1; AT1G79280 [A4GSN8-1]
AT1G79280.2; AT1G79280.2; AT1G79280 [A4GSN8-2]
AT1G79280.3; AT1G79280.3; AT1G79280 [A4GSN8-3]

Database of genes from NCBI RefSeq genomes

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GeneIDi
844268

Gramene; a comparative resource for plants

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Gramenei
AT1G79280.1; AT1G79280.1; AT1G79280 [A4GSN8-1]
AT1G79280.2; AT1G79280.2; AT1G79280 [A4GSN8-2]
AT1G79280.3; AT1G79280.3; AT1G79280 [A4GSN8-3]

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT1G79280

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF426860 mRNA Translation: ABO21684.1
AC002986 Genomic DNA Translation: AAC17058.1 Sequence problems.
AC002986 Genomic DNA Translation: AAC17060.1 Sequence problems.
AC002986 Genomic DNA Translation: AAC17073.1 Sequence problems.
AC002986 Genomic DNA Translation: AAC17074.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE36226.1
CP002684 Genomic DNA Translation: AEE36227.1
CP002684 Genomic DNA Translation: AEE36228.1
AF083705 mRNA Translation: AAN60264.1
PIRiT01025
T01026
T01028
T01029
RefSeqiNP_001185435.1, NM_001198506.1 [A4GSN8-3]
NP_001185436.1, NM_001198507.1 [A4GSN8-2]
NP_178048.2, NM_106578.3 [A4GSN8-1]

3D structure databases

SMRiA4GSN8
ModBaseiSearch...

Protein-protein interaction databases

BioGridi29487, 7 interactors
IntActiA4GSN8, 1 interactor
STRINGi3702.AT1G79280.2

PTM databases

iPTMnetiA4GSN8

Proteomic databases

PaxDbiA4GSN8
PRIDEiA4GSN8

Genome annotation databases

EnsemblPlantsiAT1G79280.1; AT1G79280.1; AT1G79280 [A4GSN8-1]
AT1G79280.2; AT1G79280.2; AT1G79280 [A4GSN8-2]
AT1G79280.3; AT1G79280.3; AT1G79280 [A4GSN8-3]
GeneIDi844268
GrameneiAT1G79280.1; AT1G79280.1; AT1G79280 [A4GSN8-1]
AT1G79280.2; AT1G79280.2; AT1G79280 [A4GSN8-2]
AT1G79280.3; AT1G79280.3; AT1G79280 [A4GSN8-3]
KEGGiath:AT1G79280

Organism-specific databases

AraportiAT1G79280
TAIRilocus:2207390 AT1G79280

Phylogenomic databases

eggNOGiKOG4674 Eukaryota
ENOG410XSA1 LUCA
HOGENOMiHOG000254782
InParanoidiA4GSN8
KOiK09291
OMAiKYDRVDP
OrthoDBi20957at2759
PhylomeDBiA4GSN8

Miscellaneous databases

Protein Ontology

More...
PROi
PR:A4GSN8

Gene expression databases

ExpressionAtlasiA4GSN8 baseline and differential
GenevisibleiA4GSN8 AT

Family and domain databases

InterProiView protein in InterPro
IPR012929 TPR/MLP1
PfamiView protein in Pfam
PF07926 TPR_MLP1_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNUA_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A4GSN8
Secondary accession number(s): F4IDK8
, F4IDK9, O64521, O64522, O64524, O64525, Q8H7F1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 10, 2010
Last sequence update: April 17, 2007
Last modified: October 16, 2019
This is version 82 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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