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Protein
Submitted name:

Ferredoxin-dependent glutamate synthase, Fd-GOGAT

Gene

WH7805_07246

Organism
Synechococcus sp. (strain WH7805)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Ferredoxin-dependent glutamate synthase, Fd-GOGATImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:WH7805_07246Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSynechococcus sp. (strain WH7805)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri59931 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeSynechococcus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001224 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
59931.WH7805_07246

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
A4CSR9

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini27 – 419Glutamine amidotransferase type-2InterPro annotationAdd BLAST393

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105CBC Bacteria
COG0067 LUCA
COG0069 LUCA
COG0070 LUCA

Database of Orthologous Groups

More...
OrthoDBi
POG091H00EM

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A4CSR9

Family and domain databases

Conserved Domains Database

More...
CDDi
cd02808 GltS_FMN, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.60, 1 hit
3.20.20.70, 2 hits
3.60.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR013785 Aldolase_TIM
IPR017932 GATase_2_dom
IPR002489 Glu_synth_asu_C
IPR036485 Glu_synth_asu_C_sf
IPR006982 Glu_synth_centr_N
IPR002932 Glu_synthdom
IPR029055 Ntn_hydrolases_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00310 GATase_2, 1 hit
PF04898 Glu_syn_central, 1 hit
PF01645 Glu_synthase, 1 hit
PF01493 GXGXG, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56235 SSF56235, 1 hit
SSF69336 SSF69336, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51278 GATASE_TYPE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A4CSR9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSHPTGSLWP YSDSAAPEAV AGEKDACGVG FLAQLSGETS HWVLQQALRG
60 70 80 90 100
LGCMEHRGGC GGDGDSGDGA GVLCQIPWTY LKAVWPEATS ARGLGMMFMP
110 120 130 140 150
QDPERRELAR RFCNEEAEAL GLISAGWRAV PVDPSVLGPM ARDTAPVIEQ
160 170 180 190 200
WSLAGGPDGD AFEALLLRLR RRIGARSRKA WGFEGSRDLY VASLSSRTVV
210 220 230 240 250
YKGMVRSEVL AQYYADLRDP RFEVSFAVYH RRFSTNTLPR WPLAQPMRLL
260 270 280 290 300
GHNGEINTLL GNLNWAKASE ASLADVWGEA ADDLNPVVNP AFSDSANLDA
310 320 330 340 350
TLELMVRSGR SITDSLITLV PEAFRNQPDL EDRPEVTAMY EFNAGIQEPW
360 370 380 390 400
DGPALLVFAD GKRVGATLDR NGLRPARWCT TADGFVIMGS ETGVVDLRGK
410 420 430 440 450
TVVQKGRLGP GQMVAVDLEN GQLLDNWTVK EDAAGRFPYG DWLQQHRRSV
460 470 480 490 500
AAQPWTQERQ IGELDLLRLQ TAMGFTAEDF DLVIEDMAGL GKEPTYCMGD
510 520 530 540 550
DIPLAVLSDK PHLLYDYFKQ RFAQVTNPPI DPLREKLVMS LEMHLGERRP
560 570 580 590 600
ALKPQAEAAA VIHLDTPVLN EAELAAIGEQ GLPVATLSTQ VTVEACAGGL
610 620 630 640 650
SSALQGLCQA AEEAVRGGAQ VLVLSDRVDG SGAAAQLTAT SVAMPALLAV
660 670 680 690 700
GAVHHHLLRQ KLRLRCSLVI DTAQCWSTHH MACLIGYGAS AVCPWLTWET
710 720 730 740 750
TRHWLAHPKT QKRIEQGKLP ALDANKVQEN VRLSLENGLR KILSKIGISL
760 770 780 790 800
LASYHGAQIF EAIGLGADVI DTAFTGTTSR VAGMTLAELA NETLSLHAKA
810 820 830 840 850
FPELNRSKLE FMGFVQYRTG GEYHLNSPDM AKALHAAVKT GPGYDHFSTY
860 870 880 890 900
KTLLENRPVT ALRDLLEFKL APAPLPLDQV ESAESLCKRF CTGGMSLGAL
910 920 930 940 950
SREAHEVLAV AMNRIGGKSN SGEGGEDPAR FQILHDVDAD GRSQAFPSIG
960 970 980 990 1000
GLRNGDTACS AIKQIASGRF GVTAEYLRSG KQLEIKVAQG AKPGEGGQLP
1010 1020 1030 1040 1050
GPKVDQYIAW LRNSKPGVAL ISPPPHHDIY SIEDLAQLIH DLHQVHPKAP
1060 1070 1080 1090 1100
VSVKLVAEIG IGTIAAGVAK ANADVIQISG HDGGTGASPL SSIKHAGSPW
1110 1120 1130 1140 1150
ELGLTEVHRS LLENGLRDRV LLRADGGLKT GWDVVIAALL GAEEYGFGSV
1160 1170 1180 1190 1200
AMIAEGCIMA RVCHTNNCPV GVATQKEALR KRFTGVPEHV VNFFWYVAEE
1210 1220 1230 1240 1250
VRQLLSILGV AKIEDLIGRS DLLQPRAVDL AKTRGVDLSS LLAPIQGSED
1260 1270 1280 1290 1300
RSWLRHSAEA HGNGPILEDE LLADAELMEA VERHESLSRT ITIINTDRSV
1310 1320 1330 1340 1350
GARLAGEIAQ RHGNRGFDGQ LNLTFQGAAG QSFGAFLVKG MNVRLEGEAN
1360 1370 1380 1390 1400
DYVGKGMNSG RISLVPSDGC SNPGDQVILG NTCLYGATGG ELFALGRAGE
1410 1420 1430 1440 1450
RFGVRNSGAR TVVEGAGDHC CEYMTGGVVV VLGGTGRNVG AGMTGGVTFL
1460 1470 1480 1490 1500
LDEGDRVLPR VNPEIVEVCS LTTAQQESTL KELLEAHVAA TGSAKASALL
1510 1520 1530
ADWAAAKTRF KVLIPPSERA VMGLVDQQAV AA
Length:1,532
Mass (Da):164,253
Last modified:April 3, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8934B90085D29557
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAOK01000002 Genomic DNA Translation: EAR19133.1

NCBI Reference Sequences

More...
RefSeqi
WP_006042258.1, NZ_CH724168.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
EAR19133; EAR19133; WH7805_07246

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAOK01000002 Genomic DNA Translation: EAR19133.1
RefSeqiWP_006042258.1, NZ_CH724168.1

3D structure databases

ProteinModelPortaliA4CSR9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi59931.WH7805_07246

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiEAR19133; EAR19133; WH7805_07246

Phylogenomic databases

eggNOGiENOG4105CBC Bacteria
COG0067 LUCA
COG0069 LUCA
COG0070 LUCA
OrthoDBiPOG091H00EM
PhylomeDBiA4CSR9

Family and domain databases

CDDicd02808 GltS_FMN, 1 hit
Gene3Di2.160.20.60, 1 hit
3.20.20.70, 2 hits
3.60.20.10, 1 hit
InterProiView protein in InterPro
IPR013785 Aldolase_TIM
IPR017932 GATase_2_dom
IPR002489 Glu_synth_asu_C
IPR036485 Glu_synth_asu_C_sf
IPR006982 Glu_synth_centr_N
IPR002932 Glu_synthdom
IPR029055 Ntn_hydrolases_N
PfamiView protein in Pfam
PF00310 GATase_2, 1 hit
PF04898 Glu_syn_central, 1 hit
PF01645 Glu_synthase, 1 hit
PF01493 GXGXG, 1 hit
SUPFAMiSSF56235 SSF56235, 1 hit
SSF69336 SSF69336, 1 hit
PROSITEiView protein in PROSITE
PS51278 GATASE_TYPE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA4CSR9_SYNPV
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A4CSR9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: November 7, 2018
This is version 47 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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