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Protein

Ribosomal RNA small subunit methyltransferase F

Gene

rsmF

Organism
Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + cytosine(1407) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(1407) in 16S rRNA.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei146S-adenosyl-L-methionineUniRule annotation1
Binding sitei173S-adenosyl-L-methionineUniRule annotation1
Binding sitei191S-adenosyl-L-methionineUniRule annotation1
Active sitei244NucleophileUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, RNA-binding, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciSLOI323850:G1G8D-1680-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase FUniRule annotation (EC:2.1.1.178UniRule annotation)
Alternative name(s):
16S rRNA m5C1407 methyltransferaseUniRule annotation
rRNA (cytosine-C(5)-)-methyltransferase RsmFUniRule annotation
Gene namesi
Name:rsmFUniRule annotation
Ordered Locus Names:Shew_1583
OrganismiShewanella loihica (strain ATCC BAA-1088 / PV-4)
Taxonomic identifieri323850 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000001558 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000692731 – 486Ribosomal RNA small subunit methyltransferase FAdd BLAST486

Interactioni

Protein-protein interaction databases

STRINGi323850.Shew_1583

Structurei

3D structure databases

ProteinModelPortaliA3QDA2
SMRiA3QDA2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni122 – 128S-adenosyl-L-methionine bindingUniRule annotation7

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CYJ Bacteria
COG0144 LUCA
COG3270 LUCA
HOGENOMiHOG000218115
KOiK11392
OMAiDPLFHAG
OrthoDBiPOG091H02E2

Family and domain databases

HAMAPiMF_01579 16SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR031341 Methyltr_RsmF_N
IPR001678 MeTrfase_RsmB/NOP2
IPR027391 Nol1_Nop2_Fmu_2
IPR011023 Nop2p
IPR023267 RCMT
IPR023545 rRNA_ssu_MeTfrase_F
IPR029063 SAM-dependent_MTases
PfamiView protein in Pfam
PF01189 Methyltr_RsmB-F, 1 hit
PF17125 Methyltr_RsmF_N, 1 hit
PF13636 Methyltranf_PUA, 1 hit
PRINTSiPR02008 RCMTFAMILY
SUPFAMiSSF53335 SSF53335, 1 hit
TIGRFAMsiTIGR00446 nop2p, 1 hit
PROSITEiView protein in PROSITE
PS51686 SAM_MT_RSMB_NOP, 1 hit

Sequencei

Sequence statusi: Complete.

A3QDA2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVQLNQNFIN SIAKDMPDHL SMDEFISYCA KPLRPSIRVN TLKITTADFI
60 70 80 90 100
TMMNAKGWQF EPVPWCEDGF WVKVDDSVQL GNTVEHIQGL FYIQEASSML
110 120 130 140 150
PPKALFPEPI EDATSLTLLD MASAPGSKTT QLAAMMNNQG LLVANEYSSS
160 170 180 190 200
RVKVLHANVQ RMGASNLALT HFDARVFGKY LFESFDAILL DAPCGGEGTV
210 220 230 240 250
RKDPDALKHW DESEIEAIAS VQRDLIESAF LALKPGGSLV YSTCTLNRRE
260 270 280 290 300
NQDVCLHLKA TYGDAVQFES LAGLFPGAEK ASTSEGFLHV WPQIFDSEGF
310 320 330 340 350
FIAKLTKIAA VPRNSEEPRK QKNFPFTPID KKSRQALCDY FDTSFGIKLD
360 370 380 390 400
GQGILMQRDD EFWLFPTNVD PLIGKIRFQR IGLKLADALK KGFKPRHEAV
410 420 430 440 450
MALADRLRGI PLDEAQAIQY LMGRDIALTS KEKPQGERLV SYQGAHLGLV
460 470 480
KHLGNKLKNS LPRDLVRDKI CSSSAMAVDQ QATGED
Length:486
Mass (Da):54,052
Last modified:April 3, 2007 - v1
Checksum:iC1E1A58663F9AAF7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000606 Genomic DNA Translation: ABO23450.1
RefSeqiWP_011865382.1, NC_009092.1

Genome annotation databases

EnsemblBacteriaiABO23450; ABO23450; Shew_1583
KEGGislo:Shew_1583

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000606 Genomic DNA Translation: ABO23450.1
RefSeqiWP_011865382.1, NC_009092.1

3D structure databases

ProteinModelPortaliA3QDA2
SMRiA3QDA2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323850.Shew_1583

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABO23450; ABO23450; Shew_1583
KEGGislo:Shew_1583

Phylogenomic databases

eggNOGiENOG4105CYJ Bacteria
COG0144 LUCA
COG3270 LUCA
HOGENOMiHOG000218115
KOiK11392
OMAiDPLFHAG
OrthoDBiPOG091H02E2

Enzyme and pathway databases

BioCyciSLOI323850:G1G8D-1680-MONOMER

Family and domain databases

HAMAPiMF_01579 16SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR031341 Methyltr_RsmF_N
IPR001678 MeTrfase_RsmB/NOP2
IPR027391 Nol1_Nop2_Fmu_2
IPR011023 Nop2p
IPR023267 RCMT
IPR023545 rRNA_ssu_MeTfrase_F
IPR029063 SAM-dependent_MTases
PfamiView protein in Pfam
PF01189 Methyltr_RsmB-F, 1 hit
PF17125 Methyltr_RsmF_N, 1 hit
PF13636 Methyltranf_PUA, 1 hit
PRINTSiPR02008 RCMTFAMILY
SUPFAMiSSF53335 SSF53335, 1 hit
TIGRFAMsiTIGR00446 nop2p, 1 hit
PROSITEiView protein in PROSITE
PS51686 SAM_MT_RSMB_NOP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRSMF_SHELP
AccessioniPrimary (citable) accession number: A3QDA2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: April 3, 2007
Last modified: October 10, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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