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Protein
Submitted name:

Glycoside hydrolase family 9

Gene

Cthe_0624

Organism
Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium thermocellum)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi803ZincCombined sources1
Metal bindingi822Calcium 1Combined sources1
Metal bindingi894ZincCombined sources1
Metal bindingi918Calcium 1; via carbonyl oxygenCombined sources1
Metal bindingi921Calcium 1Combined sources1
Metal bindingi923Calcium 1; via carbonyl oxygenCombined sources1
Metal bindingi1163Zinc; via carbonyl oxygenCombined sources1
Metal bindingi1169ZincCombined sources1
Metal bindingi1356Calcium 2Combined sources1
Metal bindingi1357Calcium 2; via carbonyl oxygenCombined sources1
Metal bindingi1385Calcium 2Combined sources1
Metal bindingi1387Calcium 2Combined sources1
Metal bindingi1428Calcium 2Combined sources1
Metal bindingi1448Calcium 3Combined sources1
Metal bindingi1453Calcium 3; via carbonyl oxygenCombined sources1
Metal bindingi1455Calcium 3Combined sources1
Metal bindingi1482Calcium 3; via carbonyl oxygenCombined sources1
Metal bindingi1485Calcium 3; via carbonyl oxygenCombined sources1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseImported
LigandCalciumCombined sources, Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciCTHE203119:G1G86-652-MONOMER
MetaCyc:MONOMER-16427

Protein family/group databases

CAZyiCBM30 Carbohydrate-Binding Module Family 30
CBM44 Carbohydrate-Binding Module Family 44
GH44 Glycoside Hydrolase Family 44
GH9 Glycoside Hydrolase Family 9

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 9Imported
Gene namesi
Ordered Locus Names:Cthe_0624Imported
OrganismiClostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium thermocellum)Imported
Taxonomic identifieri203119 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesHungateiclostridiaceaeHungateiclostridium
Proteomesi
  • UP000002145 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27Sequence analysisAdd BLAST27
ChainiPRO_500265238528 – 1601Sequence analysisAdd BLAST1574

Interactioni

Protein-protein interaction databases

STRINGi203119.Cthe_0624

Structurei

3D structure databases

ProteinModelPortaliA3DD30
SMRiA3DD30
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA3DD30

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1286 – 1352DockerinInterPro annotationAdd BLAST67
Domaini1359 – 1449PKDInterPro annotationAdd BLAST91

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108J54 Bacteria
COG3291 LUCA
KOiK01179
OrthoDBiPOG091H19DX

Family and domain databases

CDDicd02850 E_set_Cellulase_N, 1 hit
Gene3Di1.50.10.10, 1 hit
2.60.120.260, 1 hit
2.60.40.10, 2 hits
2.60.40.1180, 1 hit
InterProiView protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR012341 6hp_glycosidase-like_sf
IPR004197 Cellulase_Ig-like
IPR002105 Dockerin_1_rpt
IPR016134 Dockerin_dom
IPR036439 Dockerin_dom_sf
IPR008979 Galactose-bd-like_sf
IPR024745 Glyco_hydro_44
IPR001701 Glyco_hydro_9
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR022409 PKD/Chitinase_dom
IPR000601 PKD_dom
IPR035986 PKD_dom_sf
PfamiView protein in Pfam
PF02927 CelD_N, 1 hit
PF00404 Dockerin_1, 1 hit
PF12891 Glyco_hydro_44, 1 hit
PF00759 Glyco_hydro_9, 1 hit
PF00801 PKD, 1 hit
SMARTiView protein in SMART
SM00089 PKD, 1 hit
SUPFAMiSSF48208 SSF48208, 1 hit
SSF49299 SSF49299, 1 hit
SSF49785 SSF49785, 1 hit
SSF51445 SSF51445, 1 hit
SSF63446 SSF63446, 1 hit
SSF81296 SSF81296, 1 hit
PROSITEiView protein in PROSITE
PS51766 DOCKERIN, 1 hit
PS50093 PKD, 1 hit

Sequencei

Sequence statusi: Complete.

A3DD30-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKRRLSLLL VLAIMFTMVV PQISASAETV APEGYRKLLD VQIFKDSPVV
60 70 80 90 100
GWSGSGMGEL ETIGDTLPVD TTVTYNGLPT LRLNVQTTVQ SGWWISLLTL
110 120 130 140 150
RGWNTHDLSQ YVENGYLEFD IKGKEGGEDF VIGFRDKVYE RVYGLEIDVT
160 170 180 190 200
TVISNYVTVT TDWQHVKIPL RDLMKINNGF DPSSVTCLVF SKRYADPFTV
210 220 230 240 250
WFSDIKITSE DNEKSAPAIK VNQLGFIPEA EKYALVTGFA EELAVSEGDE
260 270 280 290 300
FAVINAADNS VAYTGKLTLV TEYEPLDSGE KILKADFSDL TVPGKYYISI
310 320 330 340 350
EGLDNSPKFE IGEGIYGPLV VDAARYFYYQ RQGIELEEPY AQGYPRKDVT
360 370 380 390 400
PQDAYAVFAS GKKDPIDITK GWYDAGDFGK YVNAGATGVS DLFWAYEMFP
410 420 430 440 450
SQFVDGQFNI PESGNGVPDI LDEARWELEW MLKMQDKESG GFYPRVQSDN
460 470 480 490 500
DENIKSRIIR DQNGCTTDDT ACAAGILAHA YLIYKDIDPD FAQECLDAAI
510 520 530 540 550
NAWKFLEKNP ENIVSPPGPY NVYDDSGDRL WAAASLYRAT GEEVYHTYFK
560 570 580 590 600
QNYKSFAQKF ESPTAYAHTW GDMWLTAFLS YLKAENKDQE VVDWIDTEFG
610 620 630 640 650
IWLENILTRY ENNPWKNAIV PGNYFWGINM QVMNVPMDAI IGSQLLGKYS
660 670 680 690 700
DRIEKLGFGS LNWLLGTNPL RFSFVSGYGE DSVKGVFSNI YNTDGKQGIP
710 720 730 740 750
KGYMPGGPNA YEGAGLSRFA AKCYTRSTGD WVANEHTVYW NSALVFMAAF
760 770 780 790 800
ANQGSEVNPG PAPEPGVTPN PTEPAKVVDI RIDTSAERKP ISPYIYGSNQ
810 820 830 840 850
ELDATVTAKR FGGNRTTGYN WENNFSNAGS DWLHYSDTYL LEDGGVPKGE
860 870 880 890 900
WSTPASVVTT FHDKALSKNV PYTLITLQAA GYVSADGNGP VSQEETAPSS
910 920 930 940 950
RWKEVKFEKG APFSLTPDTE DDYVYMDEFV NYLVNKYGNA STPTGIKGYS
960 970 980 990 1000
IDNEPALWSH THPRIHPDNV TAKELIEKSV ALSKAVKKVD PYAEIFGPAL
1010 1020 1030 1040 1050
YGFAAYETLQ SAPDWGTEGE GYRWFIDYYL DKMKKASDEE GKRLLDVLDV
1060 1070 1080 1090 1100
HWYPEARGGG ERICFGADPR NIETNKARLQ APRTLWDPTY IEDSWIGQWK
1110 1120 1130 1140 1150
KDFLPILPNL LDSIEKYYPG TKLAITEYDY GGGNHITGGI AQADVLGIFG
1160 1170 1180 1190 1200
KYGVYLATFW GDASNNYTEA GINLYTNYDG KGGKFGDTSV KCETSDIEVS
1210 1220 1230 1240 1250
SAYASIVGED DSKLHIILLN KNYDQPTTFN FSIDSSKNYT IGNVWAFDRG
1260 1270 1280 1290 1300
SSNITQRTPI VNIKDNTFTY TVPALTACHI VLEAAEPVVY GDLNNDSKVN
1310 1320 1330 1340 1350
AVDIMMLKRY ILGIIDNINL TAADIYFDGV VNSSDYNIMK RYLLKAIEDI
1360 1370 1380 1390 1400
PYVPENQAPK AIFTFSPEDP VTDENVVFNA SNSIDEDGTI AYYVWDFGDG
1410 1420 1430 1440 1450
YEGTSTTPTI TYKYKNPGTY KVKLIVTDNQ GASSSFTATI KVTSATGDNS
1460 1470 1480 1490 1500
KFNFEDGTLG GFTTSGTNAT GVVVNTTEKA FKGERGLKWT VTSEGEGTAE
1510 1520 1530 1540 1550
LKLDGGTIVV PGTTMTFRIW IPSGAPIAAI QPYIMPHTPD WSEVLWNSTW
1560 1570 1580 1590 1600
KGYTMVKTDD WNEITLTLPE DVDPTWPQQM GIQVQTIDEG EFTIYVDAID

W
Length:1,601
Mass (Da):178,087
Last modified:March 20, 2007 - v1
Checksum:i7866DD3F41E46DD8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000568 Genomic DNA Translation: ABN51859.1
RefSeqiWP_003516552.1, NC_009012.1

Genome annotation databases

EnsemblBacteriaiABN51859; ABN51859; Cthe_0624
GeneIDi35805333
KEGGicth:Cthe_0624

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000568 Genomic DNA Translation: ABN51859.1
RefSeqiWP_003516552.1, NC_009012.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1WMXX-ray2.00A/B31-235[»]
1WZXX-ray3.52A/B/C/D31-235[»]
2C26X-ray2.10A1353-1601[»]
2E0PX-ray1.60A773-1287[»]
2EEXX-ray2.00A773-1287[»]
2EJ1X-ray1.80A773-1287[»]
2EQDX-ray2.80A773-1287[»]
ProteinModelPortaliA3DD30
SMRiA3DD30
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi203119.Cthe_0624

Protein family/group databases

CAZyiCBM30 Carbohydrate-Binding Module Family 30
CBM44 Carbohydrate-Binding Module Family 44
GH44 Glycoside Hydrolase Family 44
GH9 Glycoside Hydrolase Family 9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABN51859; ABN51859; Cthe_0624
GeneIDi35805333
KEGGicth:Cthe_0624

Phylogenomic databases

eggNOGiENOG4108J54 Bacteria
COG3291 LUCA
KOiK01179
OrthoDBiPOG091H19DX

Enzyme and pathway databases

BioCyciCTHE203119:G1G86-652-MONOMER
MetaCyc:MONOMER-16427

Miscellaneous databases

EvolutionaryTraceiA3DD30

Family and domain databases

CDDicd02850 E_set_Cellulase_N, 1 hit
Gene3Di1.50.10.10, 1 hit
2.60.120.260, 1 hit
2.60.40.10, 2 hits
2.60.40.1180, 1 hit
InterProiView protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR012341 6hp_glycosidase-like_sf
IPR004197 Cellulase_Ig-like
IPR002105 Dockerin_1_rpt
IPR016134 Dockerin_dom
IPR036439 Dockerin_dom_sf
IPR008979 Galactose-bd-like_sf
IPR024745 Glyco_hydro_44
IPR001701 Glyco_hydro_9
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR022409 PKD/Chitinase_dom
IPR000601 PKD_dom
IPR035986 PKD_dom_sf
PfamiView protein in Pfam
PF02927 CelD_N, 1 hit
PF00404 Dockerin_1, 1 hit
PF12891 Glyco_hydro_44, 1 hit
PF00759 Glyco_hydro_9, 1 hit
PF00801 PKD, 1 hit
SMARTiView protein in SMART
SM00089 PKD, 1 hit
SUPFAMiSSF48208 SSF48208, 1 hit
SSF49299 SSF49299, 1 hit
SSF49785 SSF49785, 1 hit
SSF51445 SSF51445, 1 hit
SSF63446 SSF63446, 1 hit
SSF81296 SSF81296, 1 hit
PROSITEiView protein in PROSITE
PS51766 DOCKERIN, 1 hit
PS50093 PKD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA3DD30_CLOTH
AccessioniPrimary (citable) accession number: A3DD30
Entry historyiIntegrated into UniProtKB/TrEMBL: March 20, 2007
Last sequence update: March 20, 2007
Last modified: November 7, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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