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UniProtKB - A2YPL6 (A2YPL6_ORYSI)

Entry version 83 (07 Oct 2020)
Sequence version 1 (20 Mar 2007)
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Protein
Submitted name:

Uncharacterized protein

Gene

OsI_27209

Organism
Oryza sativa subsp. indica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulationARBA annotation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:OsI_27209Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. indica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39946 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007015 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 7

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		A2YPL6

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini248 – 308DDTInterPro annotationAdd BLAST61
Domaini443 – 490PHD-typeInterPro annotationAdd BLAST48

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni65 – 86DisorderedSequence analysisAdd BLAST22
Regioni136 – 162DisorderedSequence analysisAdd BLAST27
Regioni194 – 217DisorderedSequence analysisAdd BLAST24
Regioni1223 – 1246DisorderedSequence analysisAdd BLAST24
Regioni1409 – 1432DisorderedSequence analysisAdd BLAST24

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1223 – 1237BasicSequence analysisAdd BLAST15
Compositional biasi1412 – 1432PolyampholyteSequence analysisAdd BLAST21

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationARBA annotation

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_002742_2_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		DCIFRVT

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR018501, DDT_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02791, DDT, 1 hit
PF00628, PHD, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00571, DDT, 1 hit
SM00249, PHD, 3 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF57903, SSF57903, 2 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50827, DDT, 1 hit
PS01359, ZF_PHD_1, 1 hit
PS50016, ZF_PHD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A2YPL6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEGLVGRAVR KEFPGFGVFD GVVESYDAEA GYFRVMYEDG DSEEVELGEV 
        60         70         80         90        100
VGLLVGGSPV GVEMAHPLPL TPGRRPKKRR RGDEEGGVGV GAVVAMEVDS 
       110        120        130        140        150
VVLAVPAGGA EPASPVVVVE GSSRDEVDGD VVSEMAEKRR RVVSPGPESS 
       160        170        180        190        200
GKPLRRSARQ AKAAARVAEM EAAAAVAAAA EAEAAAAAMA EAEAEAAVTP 
       210        220        230        240        250
PQSGSKRKRA SGAGRYRSVA KDLEKAAVER LPPKPELPPS SQSLDLEGLP 
       260        270        280        290        300
ALDVFQVYSC LRSFSRQLFL SPFLLETFVA ALRCIYVNPL IDWVHFSLLR 
       310        320        330        340        350
AMKSHLEDLA NEGDPPAMHC IRNLNWELLD LATWPIYLAE YLLTRGSELR 
       360        370        380        390        400
YGMKLTDLKL LNTEYYTQPA MVKLELLRAL CDDVLEIEAI RSEVVSRMSE 
       410        420        430        440        450
LDGNDELCKS TRTRRKRRAS AVKNLLNSSR APEDSSDTED GNSDECYLCG 
       460        470        480        490        500
MDGNLLCCDG CPAAFHSKCV GVVEDLLPEG NWFCPECLIQ KNDGFKNMVK 
       510        520        530        540        550
PGRGAEVLGM DPHDRLYFGT CGYILVVEST AEDSLDSTCH YYGIFDHHSL 
       560        570        580        590        600
FNVLRTCHPS YSSITNMISL FWGTAIDSFD SNGRCENNKE FSIFDAKIDC 
       610        620        630        640        650
SHLLPSKQHT EHEQLKSDKN GSCEQLACGK AHASDPDRLD HDTSHHKFSL 
       660        670        680        690        700
RSAVISENGN ATSAKTQQDV CSYANGLPAE NKIDQSPHKK ISDCYIHSNP 
       710        720        730        740        750
AMYVNYYSFG QIAASAAEEL KDKLSENKEG KKVGQDAASF QLKTICKKYA 
       760        770        780        790        800
NIFALTDQKL SVELRKEKCG WCNSCQISGG VDCIFRVTDG KCMEGLQSEK 
       810        820        830        840        850
NMNSHIILAI HIILSIEERL NGLLIGPWKN PQFSSYWRKA VLKASDVSSL 
       860        870        880        890        900
KQPLLMLESS VRRVAFSVEW QKPADSVEVV GSAAHVLVRT SNKSSRHGST 
       910        920        930        940        950
RKPGRKPFIV ELKVDSRDVG VYWRRGGRLS RQVFHWKRLP KSLTYKAVRQ 
       960        970        980        990       1000
AGRIKIPTIL YSDGSQFARR SKYIAWQAAV EMAENVAQFI LQIKELEFNI 
      1010       1020       1030       1040       1050
RWTEIWSTLP ASLATKETQK IARLFKKVIV RRKRVDGTNV EYLLDFGKRE 
      1060       1070       1080       1090       1100
NIPPVIAKHG KKLDEPSNER NRYWLSEGHL PLSLLKAYEA KALTRLLKKK 
      1110       1120       1130       1140       1150
DIDHLPKKMI DLKPPKPKKS GFDDLLEKAK KQVLGLCGHC DKEVKISDAV 
      1160       1170       1180       1190       1200
NCQYCEALFH KKHFKVPRGA TDAYYVCNKC LSEKVLNVKS PQKKVVSKKN 
      1210       1220       1230       1240       1250
SLKKKTKKQS LKIVTRSKQI VAKSKKKMGK NKGKRGRPRK YPLNESKNKL 
      1260       1270       1280       1290       1300
PELRVKEPAN VPKNEPAKRI SKRLYSKYMK GNSNISERSA KRRRTASHYS 
      1310       1320       1330       1340       1350
YWLDGLRWTQ NPNDDRAISF RTERVVFPCE DADLSEVFPV CRLCQKCYSG 
      1360       1370       1380       1390       1400
ESIYIACEDC GDWFHGDIYS ITLENVNNLI GFKCHRCRLK DVPVCPYVQT 
      1410       1420       1430       1440       1450
DNILMAQSDK DDVTSRSIED KEDRSPTDLV AHDSLEGSHG HIIEKEVNDH 
      1460       1470       1480       1490       1500
SFEKEVGDHI CLQAQEDHNE KELDSHSTEK ELGDHNKTEE FDGNMKVLFN 
      1510       1520       1530       1540       1550
LNSTKELDST STEKELGDHN KIEEFDVNME MFFNLNNTKE LDSTGESICA 
      1560       1570       1580       1590       1600
GGEAHCLHEL NNHEILKECH SLDNNLGELD NQDCQKECHN QNSLKELENH 
      1610       1620       1630       1640       1650
RSSQELDSHK SPEELDNIIS PKELDCTENN EHSAAVTQSD GFLDDPFNIR 
      1660       1670       1680       1690 
ISDKGLIIAS ENGKIKESIP LQTKNKPEEN PVPADHDIDL QVVVTL
Length:1,696
Mass (Da):189,865
Last modified:March 20, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6F536A7B1D420FB5
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CM000132 Genomic DNA Translation: EAZ05027.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		BGIOSGA023767-TA; BGIOSGA023767-PA; BGIOSGA023767

Gramene; a comparative resource for plants

More...Gramenei		BGIOSGA023767-TA; BGIOSGA023767-PA; BGIOSGA023767

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000132 Genomic DNA Translation: EAZ05027.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Proteomic databases

PRIDEiA2YPL6

Genome annotation databases

EnsemblPlantsiBGIOSGA023767-TA; BGIOSGA023767-PA; BGIOSGA023767
GrameneiBGIOSGA023767-TA; BGIOSGA023767-PA; BGIOSGA023767

Phylogenomic databases

HOGENOMiCLU_002742_2_0_1
OMAiDCIFRVT

Family and domain databases

Gene3Di3.30.40.10, 2 hits
InterProiView protein in InterPro
IPR018501, DDT_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF02791, DDT, 1 hit
PF00628, PHD, 1 hit
SMARTiView protein in SMART
SM00571, DDT, 1 hit
SM00249, PHD, 3 hits
SUPFAMiSSF57903, SSF57903, 2 hits
PROSITEiView protein in PROSITE
PS50827, DDT, 1 hit
PS01359, ZF_PHD_1, 1 hit
PS50016, ZF_PHD_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA2YPL6_ORYSI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A2YPL6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 20, 2007
Last sequence update: March 20, 2007
Last modified: October 7, 2020
This is version 83 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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