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Protein

Homeobox-leucine zipper protein HOX29

Gene

HOX29

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi2 – 65HomeoboxPROSITE-ProRule annotationAdd BLAST64

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox-leucine zipper protein HOX29
Alternative name(s):
HD-ZIP protein HOX29
Homeodomain transcription factor HOX29
OsHox29
Gene namesi
Name:HOX29
ORF Names:OsI_000758
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000007015 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003317291 – 861Homeobox-leucine zipper protein HOX29Add BLAST861

Proteomic databases

PRIDEiA2WLR5

Expressioni

Tissue specificityi

Expressed in roots, stems and leaf blades.1 Publication

Gene expression databases

ExpressionAtlasiA2WLR5 differential

Structurei

3D structure databases

ProteinModelPortaliA2WLR5
SMRiA2WLR5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini162 – 390STARTPROSITE-ProRule annotationAdd BLAST229

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili57 – 99Sequence analysisAdd BLAST43

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi150 – 153Poly-Gln4
Compositional biasi633 – 636Poly-Gly4
Compositional biasi644 – 647Poly-Ser4

Sequence similaritiesi

Keywords - Domaini

Coiled coil, Homeobox

Phylogenomic databases

eggNOGiENOG410IFI0 Eukaryota
ENOG410XQ3R LUCA

Family and domain databases

CDDicd00086 homeodomain, 1 hit
Gene3Di3.30.530.20, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001356 Homeobox_dom
IPR013978 MEKHLA
IPR023393 START-like_dom_sf
IPR002913 START_lipid-bd_dom
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PF08670 MEKHLA, 1 hit
PF01852 START, 1 hit
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SM00234 START, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS50071 HOMEOBOX_2, 1 hit
PS50848 START, 1 hit

Sequencei

Sequence statusi: Complete.

A2WLR5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECP ALANVDPKQI
60 70 80 90 100
KVWFQNRRCR EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY
110 120 130 140 150
DHGRHGVAAA GMMRRVPAFP PQAAAAAGHQ LATATDTSCE SVVTSGHHHQ
160 170 180 190 200
QQQHNVVQPP PRDASPAGLM SIAEETLTEF LSKATGTAVE WLQMPGMKPG
210 220 230 240 250
PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL WLRDCRSMDV
260 270 280 290 300
VNVLPAGANG TIELLYMQLY APTTLAPARD FWLLRYTSIL DDGSLVVCER
310 320 330 340 350
SLSSKQGGPS MPLVQPFIRG EMLPSGFLIR PSDGGGSVIH IVDHMDLEPW
360 370 380 390 400
SVPEVVRPLY ESSAMVAQKI SMAALRYLRQ VAHEDTRSVI TGWGRQPAAL
410 420 430 440 450
RALSQKLTRG FNEALNGLAD DGWSVIESDG VDDVCISVNS SKVIGCNATF
460 470 480 490 500
SSGLPIVSTG VLCAKASMLL QDVSPPSLLQ FLREHRSQWA DSNLDAFFAS
510 520 530 540 550
AMKPNFCNLP MSRLGGFSGQ VILPLAHTFE PEEFLEVIKL GNASNYQDTL
560 570 580 590 600
VHRDLFLLQM YNGVEESSAG TCSELIFAPI DASFSDDSPL LPSGFRIIPI
610 620 630 640 650
DSPLDTSSPN CTLDLASTLE AATPRSRISG VNGGGGTCAA AAASSSSKAV
660 670 680 690 700
MTIAFQFAFD GHLQDSVAAM ARQYMRNIIS SVQRIAVALS SSRLVPPGAA
710 720 730 740 750
AAAAQLSPVT PEAATLPRWI CQSYRFHFGA ELIKSVDANS SNESILKAVW
760 770 780 790 800
HHPSAILCCS LKAMPVFTFA NQSGLDMLET TLVALQDMTL EKVFDDQGRK
810 820 830 840 850
NLCTELPNIM EQGMACMEGG VCVSSVGRAA SYEKAVAWKV VDGDGGGAHC
860
ISFMFINWTF L
Length:861
Mass (Da):93,281
Last modified:April 29, 2008 - v2
Checksum:iB157B38E046B787C
GO

Sequence cautioni

The sequence EAY72911 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti277P → L in ABQ57291 (PubMed:17999151).Curated1
Sequence conflicti334G → V in ABQ57291 (PubMed:17999151).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000126 Genomic DNA Translation: EAY72911.1 Sequence problems.
EF555550 mRNA Translation: ABQ57291.1

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000126 Genomic DNA Translation: EAY72911.1 Sequence problems.
EF555550 mRNA Translation: ABQ57291.1

3D structure databases

ProteinModelPortaliA2WLR5
SMRiA2WLR5
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA2WLR5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IFI0 Eukaryota
ENOG410XQ3R LUCA

Gene expression databases

ExpressionAtlasiA2WLR5 differential

Family and domain databases

CDDicd00086 homeodomain, 1 hit
Gene3Di3.30.530.20, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001356 Homeobox_dom
IPR013978 MEKHLA
IPR023393 START-like_dom_sf
IPR002913 START_lipid-bd_dom
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PF08670 MEKHLA, 1 hit
PF01852 START, 1 hit
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SM00234 START, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS50071 HOMEOBOX_2, 1 hit
PS50848 START, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiHOX29_ORYSI
AccessioniPrimary (citable) accession number: A2WLR5
Secondary accession number(s): A5JPW5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: April 29, 2008
Last modified: November 7, 2018
This is version 62 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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