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Entry version 64 (05 Jun 2019)
Sequence version 1 (20 Feb 2007)
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Protein
Submitted name:

Clan CA, family C2, calpain-like cysteine peptidase

Gene

TVAG_256510

Organism
Trichomonas vaginalis
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1046PROSITE-ProRule annotation1
Active sitei1209PROSITE-ProRule annotation1
Active sitei1229PROSITE-ProRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • calcium-dependent cysteine-type endopeptidase activity Source: GO_Central

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase, Protease, Thiol proteasePROSITE-ProRule annotationSAAS annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Clan CA, family C2, calpain-like cysteine peptidaseImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:TVAG_256510Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTrichomonas vaginalisImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri5722 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaParabasaliaTrichomonadidaTrichomonadidaeTrichomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001542 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
TrichDB:TVAG_256510

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei15 – 39HelicalSequence analysisAdd BLAST25
Transmembranei60 – 85HelicalSequence analysisAdd BLAST26
Transmembranei97 – 117HelicalSequence analysisAdd BLAST21
Transmembranei129 – 150HelicalSequence analysisAdd BLAST22
Transmembranei162 – 179HelicalSequence analysisAdd BLAST18
Transmembranei224 – 245HelicalSequence analysisAdd BLAST22
Transmembranei251 – 271HelicalSequence analysisAdd BLAST21
Transmembranei283 – 300HelicalSequence analysisAdd BLAST18
Transmembranei306 – 331HelicalSequence analysisAdd BLAST26
Transmembranei370 – 389HelicalSequence analysisAdd BLAST20
Transmembranei409 – 429HelicalSequence analysisAdd BLAST21
Transmembranei441 – 458HelicalSequence analysisAdd BLAST18
Transmembranei470 – 488HelicalSequence analysisAdd BLAST19
Transmembranei508 – 529HelicalSequence analysisAdd BLAST22
Transmembranei535 – 559HelicalSequence analysisAdd BLAST25
Transmembranei566 – 584HelicalSequence analysisAdd BLAST19
Transmembranei590 – 615HelicalSequence analysisAdd BLAST26
Transmembranei627 – 646HelicalSequence analysisAdd BLAST20
Transmembranei652 – 674HelicalSequence analysisAdd BLAST23
Transmembranei681 – 705HelicalSequence analysisAdd BLAST25
Transmembranei711 – 734HelicalSequence analysisAdd BLAST24
Transmembranei763 – 783HelicalSequence analysisAdd BLAST21
Transmembranei789 – 813HelicalSequence analysisAdd BLAST25

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
5722.XP_001308640.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini993 – 1283Calpain catalyticInterPro annotationAdd BLAST291

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1420 – 1545DisorderedSequence analysisAdd BLAST126

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1472 – 1533PolyampholyteSequence analysisAdd BLAST62

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the peptidase C2 family.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0045 Eukaryota
ENOG410XP0B LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A2FHB3

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00044 CysPc, 1 hit
cd06174 MFS, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR022684 Calpain_cysteine_protease
IPR020846 MFS_dom
IPR038765 Papain-like_cys_pep_sf
IPR000169 Pept_cys_AS
IPR001300 Peptidase_C2_calpain_cat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00648 Peptidase_C2, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00704 CALPAIN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00230 CysPc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54001 SSF54001, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50203 CALPAIN_CAT, 1 hit
PS00139 THIOL_PROTEASE_CYS, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A2FHB3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVDYVLNFDW EGYKVYGLAF AIALVVVFII WSILISKVFE WHPFLIARYE
60 70 80 90 100
IANRIHKERN AGVTTFLSIL WWIFFSLPFL ISIAWGVITA IKFKPVTFGI
110 120 130 140 150
SIAAGLPALL FLLYGFQNYK ASGYRLSPAV RYSLVIAFIL LAGSYVAVVY
160 170 180 190 200
TFSPRNWMGE GYLLLWPPLL FYAFAIVRCR RKFKYMALPQ IYSSEEKKVD
210 220 230 240 250
FIKDLEADKF DEWLSGRGYM TWPWAVLIFF VSLIFNGLFV FLWRLKKVAQ
260 270 280 290 300
YKQAALGTGV ASFIIDFLIL LSEFTVTDNT RTIHLLFIGY IIKVIIVSFS
310 320 330 340 350
DKYWYIGHGF LFLILATYYI CRFINWLLLL ISKAMRHHVP SGDMSKISKP
360 370 380 390 400
CQDLLGKMNP EYKKPKTSEA VLTLISLLLI CAGAGFELGF FKTGDLKELP
410 420 430 440 450
FGMSQKDGYI AIVIFTIVLG LAIGGLVSVK KDNFKCKWPM SVVFIAGIIL
460 470 480 490 500
GAVFFYTFNP LKEHKDLRIL FFLVYYYLMG TIMVAFCYIG NDTTFKGKGW
510 520 530 540 550
GSLQTISLLF YCLCLLADAV CLVAIPYVYK DETVEYLGLV IFLTLTALYL
560 570 580 590 600
FAGFCFSYLK EECWNCTAFL LLIFYLIALV GLAFSGYKDA LVGTIPLAAV
610 620 630 640 650
ILILSCFIFA IAWTARKGWR FDVGPTVIVC VVSGLLTILA IVWYAYKNDL
660 670 680 690 700
DMLCLVVGLV MSTLFFAAIT YHLIQKNEYK ATWGVILSFI LMIICIIIDV
710 720 730 740 750
VGVAYTTKNA FAVISVICAI LTLISYVGIG GFVLTANSTN AITYTDIFLP
760 770 780 790 800
VRRLFNGELT NMGFIRTFAI IGFVAPWFWG LIACSFFKWY YFGSLGTSAA
810 820 830 840 850
FAVMLFMAFA LMYNVDSMSF NAIEHMEYKP IEFAVNKAIT ISGCDVDEDL
860 870 880 890 900
VVPKDESTYE KFMAYVKSRV QLFKDRNEFE AALKAQLYIT SEMQFLSDLE
910 920 930 940 950
KARKFVEKNQ LDVPFLQQTY FSTQEKKLIM KFIDAVENND RALENKEDGD
960 970 980 990 1000
YDEYVRKQEK ARAKKLINFL KEGKTQLGEY GKLIKEAMSG NTKYADPVFH
1010 1020 1030 1040 1050
PLKPVAETNG RCLQNVEWKR AEDEFKEAPT GHVNANDLCQ GALGDCYLVS
1060 1070 1080 1090 1100
AMAAICAAPH DVVDIFEDHT KIQKTGAACI SFYSMGKRGH VIVDTQLPFS
1110 1120 1130 1140 1150
TKSGKGKFVH PRDPETNGWW FTLVEKAYAK QNGSYSAIEG GNSHLALYRL
1160 1170 1180 1190 1200
VGGWPEIFNL DSLEMKERIN NGTLWKRILQ WHQDKDYICC GSHPGSDTTK
1210 1220 1230 1240 1250
SKTNIVQGHA YSVLQAVEVK GFQLLQLRNP WGDSEWNGDW SDKSPLWTKH
1260 1270 1280 1290 1300
PDIAKQLGHT DVDDGMFWIT FKDFCANYST LYVTLRLKNW HTVEFFGKFN
1310 1320 1330 1340 1350
PGPTDGAKPV STAPPADNVT QYTVKFSKGC KVKVMFEKIG PNVPTWLYAV
1360 1370 1380 1390 1400
YNKGEAVKKI FKGMPYFTEA IAPSSLVESF EFEIPDSQTQ YPWTIFPVRN
1410 1420 1430 1440 1450
KADKPHDFMM KVFATEPIES SGELKPNGSG GGAAGGAQAS APAAAKDNVK
1460 1470 1480 1490 1500
QSHGKDSSSD ESLSSVDSSD QVQEVEKAEE KKQNNARDED AKPKVAEKPK
1510 1520 1530 1540
KVEEKPKKAE EKPKKKKEGK KEKKDEKKND SDEYYSSYYY SDSYY
Length:1,545
Mass (Da):174,794
Last modified:February 20, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5C4D63CDD9D8F8E2
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DS113792 Genomic DNA Translation: EAX95710.1

NCBI Reference Sequences

More...
RefSeqi
XP_001308640.1, XM_001308639.1

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
EAX95710; EAX95710; TVAG_256510

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4753472

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
tva:TVAG_256510

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS113792 Genomic DNA Translation: EAX95710.1
RefSeqiXP_001308640.1, XM_001308639.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi5722.XP_001308640.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEAX95710; EAX95710; TVAG_256510
GeneIDi4753472
KEGGitva:TVAG_256510

Organism-specific databases

EuPathDBiTrichDB:TVAG_256510

Phylogenomic databases

eggNOGiKOG0045 Eukaryota
ENOG410XP0B LUCA
InParanoidiA2FHB3

Family and domain databases

CDDicd00044 CysPc, 1 hit
cd06174 MFS, 1 hit
InterProiView protein in InterPro
IPR022684 Calpain_cysteine_protease
IPR020846 MFS_dom
IPR038765 Papain-like_cys_pep_sf
IPR000169 Pept_cys_AS
IPR001300 Peptidase_C2_calpain_cat
PfamiView protein in Pfam
PF00648 Peptidase_C2, 1 hit
PRINTSiPR00704 CALPAIN
SMARTiView protein in SMART
SM00230 CysPc, 1 hit
SUPFAMiSSF54001 SSF54001, 1 hit
PROSITEiView protein in PROSITE
PS50203 CALPAIN_CAT, 1 hit
PS00139 THIOL_PROTEASE_CYS, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA2FHB3_TRIVA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A2FHB3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: June 5, 2019
This is version 64 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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