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Protein
Submitted name:

Stromal cell-derived factor 2-like 1

Gene

sdf2l1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Stromal cell-derived factor 2-like 1Imported
Gene namesi
Name:sdf2l1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 5

Organism-specific databases

ZFINiZDB-GENE-040808-46 sdf2l1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
ChainiPRO_500264254527 – 218Sequence analysisAdd BLAST192

Proteomic databases

PaxDbiA2BIR7
PeptideAtlasiA2BIR7

Expressioni

Gene expression databases

BgeeiENSDARG00000035631

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000113867

Structurei

3D structure databases

ProteinModelPortaliA2BIR7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 85MIRInterPro annotationAdd BLAST55
Domaini93 – 148MIRInterPro annotationAdd BLAST56
Domaini149 – 203MIRInterPro annotationAdd BLAST55

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG3358 Eukaryota
ENOG410ZBU3 LUCA
GeneTreeiENSGT00510000046663
HOGENOMiHOG000236354
HOVERGENiHBG024385
InParanoidiA2BIR7
OMAiRFQHVGT
OrthoDBiEOG091G0MFB
PhylomeDBiA2BIR7
TreeFamiTF314557

Family and domain databases

InterProiView protein in InterPro
IPR027005 GlyclTrfase_39-like
IPR036300 MIR_dom_sf
IPR016093 MIR_motif
PANTHERiPTHR10050 PTHR10050, 1 hit
PfamiView protein in Pfam
PF02815 MIR, 1 hit
SMARTiView protein in SMART
SM00472 MIR, 3 hits
SUPFAMiSSF82109 SSF82109, 1 hit
PROSITEiView protein in PROSITE
PS50919 MIR, 3 hits

Sequencei

Sequence statusi: Complete.

A2BIR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMGPLRVMSV FLDLILVCLV FSPCGARDVD SSYVTCGSLV KLMNTRHSVR
60 70 80 90 100
LHSHDVKYGS GSGQQSVTGV DSADDANSYW RIRGKPGSIC QRGAPIRCGQ
110 120 130 140 150
AIRITHMTTG RNLHSHHFSS PLSNHQEVSA FGENGEGDDL DVWNVQCSAT
160 170 180 190 200
YWDREDAVRF KHTGTEVFLS VTGEQYGHPI RGQREVHGMP SPNQHNYWKV
210
MEGVFIQPSS DPIHHDEL
Length:218
Mass (Da):24,248
Last modified:February 20, 2007 - v1
Checksum:iC458D2D799878215
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX957246 Genomic DNA No translation available.
RefSeqiNP_001003730.2, NM_001003730.1
UniGeneiDr.51929

Genome annotation databases

EnsembliENSDART00000143364; ENSDARP00000113867; ENSDARG00000035631
GeneIDi445275
KEGGidre:445275

Similar proteinsi

Entry informationi

Entry nameiA2BIR7_DANRE
AccessioniPrimary (citable) accession number: A2BIR7
Entry historyiIntegrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: March 28, 2018
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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