sdf2l1

Functionⁱ

GO - Biological processⁱ

ER-associated misfolded protein catabolic process
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Stromal cell-derived factor 2-like 1Imported
Gene namesⁱ	Name:sdf2l1Imported
Organismⁱ	Danio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifierⁱ	7955 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Osteoglossocephalai › Clupeocephala › Otomorpha › Ostariophysi › Otophysi › Cypriniphysae › Cypriniformes › Cyprinoidea › Cyprinidae › Danio
Proteomesⁱ	UP000000437 Componentⁱ: Chromosome 5

Organism-specific databases

ZFINⁱ	ZDB-GENE-040808-46 sdf2l1

ZFINⁱ

ZDB-GENE-040808-46 sdf2l1

Subcellular locationⁱ

GO - Cellular component

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Signal peptideⁱ	1 – 26	Sequence analysisAdd BLAST		26
ChainⁱPRO_5002642545	27 – 218	Sequence analysisAdd BLAST		192

Proteomic databases

PaxDbⁱ	A2BIR7
PeptideAtlas More...PeptideAtlasⁱ	A2BIR7

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSDARG00000035631 Expressed in 26 organ(s), highest expression level in female gonad

Bgeeⁱ

ENSDARG00000035631 Expressed in 26 organ(s), highest expression level in female gonad

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	7955.ENSDARP00000113867

STRINGⁱ

7955.ENSDARP00000113867

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	A2BIR7
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Length
Domainⁱ	31 – 85	MIRInterPro annotationAdd BLAST	55
Domainⁱ	93 – 148	MIRInterPro annotationAdd BLAST	56
Domainⁱ	149 – 203	MIRInterPro annotationAdd BLAST	55

Keywords - Domainⁱ

RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGⁱ	KOG3358 Eukaryota ENOG410ZBU3 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00510000046663
HOGENOMⁱ	HOG000236354
HOVERGENⁱ	HBG024385
InParanoidⁱ	A2BIR7
OMAⁱ	TGEQYGH
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0MFB
PhylomeDBⁱ	A2BIR7
TreeFamⁱ	TF314557

Family and domain databases

InterProⁱ	View protein in InterPro IPR027005 GlyclTrfase_39-like IPR036300 MIR_dom_sf IPR016093 MIR_motif
PANTHERⁱ	PTHR10050 PTHR10050, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF02815 MIR, 1 hit
SMARTⁱ	View protein in SMART SM00472 MIR, 3 hits
SUPFAMⁱ	SSF82109 SSF82109, 1 hit
PROSITEⁱ	View protein in PROSITE PS50919 MIR, 3 hits

Sequenceⁱ

Sequence statusⁱ: Complete.

A2BIR7-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MMGPLRVMSV FLDLILVCLV FSPCGARDVD SSYVTCGSLV KLMNTRHSVR 
        60         70         80         90        100
LHSHDVKYGS GSGQQSVTGV DSADDANSYW RIRGKPGSIC QRGAPIRCGQ 
       110        120        130        140        150
AIRITHMTTG RNLHSHHFSS PLSNHQEVSA FGENGEGDDL DVWNVQCSAT 
       160        170        180        190        200
YWDREDAVRF KHTGTEVFLS VTGEQYGHPI RGQREVHGMP SPNQHNYWKV 
       210 
MEGVFIQPSS DPIHHDEL

Length:218

Mass (Da):24,248

Last modified:February 20, 2007 - v1

Checksum:ⁱC458D2D799878215

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	BX957246 Genomic DNA No translation available.
NCBI Reference Sequences More...RefSeqⁱ	NP_001003730.2, NM_001003730.1
UniGeneⁱ	Dr.51929

Genome annotation databases

Ensemblⁱ	ENSDART00000143364; ENSDARP00000113867; ENSDARG00000035631
GeneIDⁱ	445275
KEGGⁱ	dre:445275

Protein	Similar proteins		Species	Score	Length	Source
A2BIR7	Stromal cell-derived factor 2-like 1		DANRE		211	UniRef100_A2BIR7

Protein	Similar proteins		Species	Score	Length	Source
A2BIR7	Stromal cell-derived factor 2-like 1		DANRE		211	UniRef90_A2BIR7
Stromal cell-derived factor 2-like 1		HYPMO		217
Sdf2l1 protein		DANRE		211

Protein	Similar proteins		Species	Score	Length	Source
A2BIR7	Stromal cell-derived factor 2-like 1		DANRE		211	UniRef50_A2BIR7
Stromal cell-derived factor 2-like 1		HYPMO		217
Stromal cell-derived factor 2		Trichoplax sp. H2		206
Uncharacterized protein		TRIAD		180
Uncharacterized protein		LEPOC		220
+58

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	BX957246 Genomic DNA No translation available.
RefSeqⁱ	NP_001003730.2, NM_001003730.1
UniGeneⁱ	Dr.51929

3D structure databases

ProteinModelPortalⁱ	A2BIR7
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	7955.ENSDARP00000113867

STRINGⁱ

7955.ENSDARP00000113867

Proteomic databases

PaxDbⁱ	A2BIR7
PeptideAtlasⁱ	A2BIR7

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSDART00000143364; ENSDARP00000113867; ENSDARG00000035631
GeneIDⁱ	445275
KEGGⁱ	dre:445275

Organism-specific databases

CTDⁱ	23753
ZFINⁱ	ZDB-GENE-040808-46 sdf2l1

Phylogenomic databases

eggNOGⁱ	KOG3358 Eukaryota ENOG410ZBU3 LUCA
GeneTreeⁱ	ENSGT00510000046663
HOGENOMⁱ	HOG000236354
HOVERGENⁱ	HBG024385
InParanoidⁱ	A2BIR7
OMAⁱ	TGEQYGH
OrthoDBⁱ	EOG091G0MFB
PhylomeDBⁱ	A2BIR7
TreeFamⁱ	TF314557

Gene expression databases

Bgeeⁱ	ENSDARG00000035631 Expressed in 26 organ(s), highest expression level in female gonad

Bgeeⁱ

ENSDARG00000035631 Expressed in 26 organ(s), highest expression level in female gonad

Family and domain databases

InterProⁱ	View protein in InterPro IPR027005 GlyclTrfase_39-like IPR036300 MIR_dom_sf IPR016093 MIR_motif
PANTHERⁱ	PTHR10050 PTHR10050, 1 hit
Pfamⁱ	View protein in Pfam PF02815 MIR, 1 hit
SMARTⁱ	View protein in SMART SM00472 MIR, 3 hits
SUPFAMⁱ	SSF82109 SSF82109, 1 hit
PROSITEⁱ	View protein in PROSITE PS50919 MIR, 3 hits
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	A2BIR7_DANRE
Accessionⁱ	A2BIR7Primary (citable) accession number: A2BIR7
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	February 20, 2007
	Last sequence update:	February 20, 2007
	Last modified:	November 7, 2018
	This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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Supporting data

UniProtKB - A2BIR7 (A2BIR7_DANRE)

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Stromal cell-derived factor 2-like 1

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Endoplasmic reticulum

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Proteomic databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ