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UniProtKB - A2AKG8 (FOCAD_MOUSE)

Entry version 77 (13 Feb 2019)
Sequence version 1 (20 Feb 2007)
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Protein

Focadhesin

Gene

Focad

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Potential tumor suppressor in gliomas.1 Publication

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Focadhesin
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Focad
Synonyms:Kiaa1797
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:2676921 Focad

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei441 – 461HelicalSequence analysisAdd BLAST21
Transmembranei1033 – 1053HelicalSequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell junction, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003144581 – 1798FocadhesinAdd BLAST1798

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei816N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		A2AKG8

MaxQB - The MaxQuant DataBase

More...MaxQBi		A2AKG8

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		A2AKG8

PeptideAtlas

More...PeptideAtlasi		A2AKG8

PRoteomics IDEntifications database

More...PRIDEi		A2AKG8

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		A2AKG8

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		A2AKG8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed by glial and neuronal cells in brain.1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSMUSG00000038368 Expressed in 236 organ(s), highest expression level in oocyte

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		A2AKG8 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		A2AKG8 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with VCL.By similarity

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10090.ENSMUSP00000095602

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi194 – 368Leu-richAdd BLAST175

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG410II1D Eukaryota
ENOG410YIIU LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00390000004438

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000113178

The HOVERGEN Database of Homologous Vertebrate Genes

More...HOVERGENi		HBG095600

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		A2AKG8

Identification of Orthologs from Complete Genome Data

More...OMAi		DSHYQPR

Database of Orthologous Groups

More...OrthoDBi		187102at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		A2AKG8

TreeFam database of animal gene trees

More...TreeFami		TF323261

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR016024 ARM-type_fold
IPR022542 DUF3730
IPR021392 Focadhesin

Pfam protein domain database

More...Pfami		View protein in Pfam
PF12530 DUF3730, 1 hit
PF11229 Focadhesin, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48371 SSF48371, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: A2AKG8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSDDIKKRFD FPNSLIQSQA VGHLIAAVLK EHGVSEKIHQ STNQTAALNL 
        60         70         80         90        100
LWEKCCSDHV VVRTACSEGL VALVAQGHAE FSYVLNGILN LTPSARNMSG 
       110        120        130        140        150
LIKALMKLLQ MQALREGQSG EKDIQDIYSI RNPPQPLITV LEHRPDCWPL 
       160        170        180        190        200
LLQQLTAFFQ QCPERSEASC VQIMAPFLWY LYCEPSQLEE YAKLRLSLLK 
       210        220        230        240        250
VLLQPRGVCE EAQLSVREQS TLQLCCSMLP CLQMKDLMQT TEMMLFVEEV 
       260        270        280        290        300
YLSLLRHPGF WKSQLTQLTL QLLCICEVSL KITGECSSLI HLLERSVELL 
       310        320        330        340        350
GEDFPVELVI IGIALLLLQM PASQQKPLLN LALKLLSLTE GQKIPKASLL 
       360        370        380        390        400
LLVPLLQILS STALEDCLAM GEEGPSRQQL ALSLVEVLQK ERHGDDSHTI 
       410        420        430        440        450
SCRLAFPVSS MYGSIFTAWR ILDVIGEESA TSDWLATVES LLSATTVIPP 
       460        470        480        490        500
HVFLLLAYLL VEDVGQNLQQ ILRVTTQLAQ ADSSQVPNLI PVLMFKLGRP 
       510        520        530        540        550
LDPVSYNHIL YTLPTLGVHK VCVGQILRVI QLLGTTPRLR AVTLRLLTSL 
       560        570        580        590        600
WEKQDRVYPE LQRFMAVSDA PSLSVGKELQ WEKLIAKAAS IRDICKQRPY 
       610        620        630        640        650
QHGADMLAAI SQVLNECTKP DQATPAALVL QGLHALCQAE VVCIRSTWNA 
       660        670        680        690        700
LSPKLSCDMR PLILKTLSEL FSLVPSLTVN TVEYENFKVQ VLSFLWTHTQ 
       710        720        730        740        750
NKNPTVASAA YKSLSHFSAG EHTILHLPEK IRPEMPVPGE LDEEESVDLS 
       760        770        780        790        800
IPGACFLRLL TITAPSVLPA LEEFFTSLVR QEMVNMPRGI YHSALKGGVR 
       810        820        830        840        850
SDQGKTVAGI PNFILKTYET NKQPGLKPGL AGGMLFCYDL AMYQSKDGKP 
       860        870        880        890        900
LNRLMASRGR SFKQTTLALI HEVHVQLSEW HRAIFLPQAW LAYMTRAYHA 
       910        920        930        940        950
ILQGRIAELE LQLQHGKEGP EEVQYKRSTA WLWVRDMLTD EITKTAAKES 
       960        970        980        990       1000
PVVKANALLA LSSLAVVVSK HEASLCSDSD GVLEIQPNFL PVKEWVSMVL 
      1010       1020       1030       1040       1050
NTLLVIVDSH YHPSGQLFTC FYHKSYSGEN TASAIARSAA ATALSLLVPV 
      1060       1070       1080       1090       1100
FIISCKEKVE EILNMLTARL PGKPSADESQ AVQIHMGLAL GMFLSRLCEE 
      1110       1120       1130       1140       1150
KLSDMSGQQM NLLLMKSLDA LESCCFDPSL EYNTGCILGV GLALSLMSHS 
      1160       1170       1180       1190       1200
SHTESRVHVA ASLRKLSTYL DESGSQSRTF QEVLVYTLSC VCTSAFSAGI 
      1210       1220       1230       1240       1250
IEAAEAEDIM SKLQLLVENN QQTSGFALAL GNLVYGLSVC GHGKAEDLGN 
      1260       1270       1280       1290       1300
RLRPSWIKVV LTEGAPTMLC LAALHGLVAL VGSDVDVMQL KSEAIQNTHF 
      1310       1320       1330       1340       1350
QARLNEVIRT LTEVISVSGV IGLQSNAIWL LGHLHLSTLS SNQSRTSVPT 
      1360       1370       1380       1390       1400
DYSYLPEGSF IRAAIGFFIT GGKKGPEAVP PSLLKVVMKP IATVGESYQY 
      1410       1420       1430       1440       1450
PPANLAALLS PLMRLNFGEE IQQLCLEIAV TQAPSSQSAA SLLGLWVMPP 
      1460       1470       1480       1490       1500
LIHGLSLNIK KYLLVSMPLW AKHVSDEQIQ GFVENLMVEV FKTASQPCHP 
      1510       1520       1530       1540       1550
EMCLSALQGL SQAMKLPSPS HHLWSLLCDA TGRIFDLLPN RIRRNDLELY 
      1560       1570       1580       1590       1600
ISIAKCLSEM TDEGVNQVSQ ITKDNIEKAA FVKLYLVSQG RLPLMSLTDL 
      1610       1620       1630       1640       1650
LTAAMQHPEK ETLAWMILHS LYQARIVNHA NTGVLKRLEW LLELMGYVRN 
      1660       1670       1680       1690       1700
IAYQSAPIQN VAPEEALDFL MLIFAAAVVA WADHEAPLLL GLSASWLPWH 
      1710       1720       1730       1740       1750
QQNGPGGPAA ALLGRSPMHR VTVQEVLTQL PRSMLLLLQK EPWKEQTQKF 
      1760       1770       1780       1790 
IDWLLSIMEI PNKAFAAKSK DLLKATLLSL RVLPEFKKKA VWTRAYGW
Length:1,798
Mass (Da):198,950
Last modified:February 20, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i129DC68F61647C09
GO
Isoform 2 (identifier: A2AKG8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     332-335: ALKL → GASK
     336-1798: Missing.

Show »
Length:335
Mass (Da):37,646
Checksum:iDFA5969805E95DD1
GO
Isoform 3 (identifier: A2AKG8-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1594: Missing.

Show »
Length:204
Mass (Da):23,097
Checksum:i536F37C0A395B85A
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PYJ6E9PYJ6_MOUSE
Focadhesin
Focad BC057079
1,712Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAE26929 differs from that shown. Reason: Erroneous initiation.Curated
The sequence BAE27017 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti638Q → R in AAH57079 (PubMed:15489334).Curated1
Sequence conflicti679V → A in AAH57079 (PubMed:15489334).Curated1
Sequence conflicti1180F → I in AAH57079 (PubMed:15489334).Curated1
Sequence conflicti1521H → R in BAE26929 (PubMed:16141072).Curated1
Sequence conflicti1521H → R in BAE27017 (PubMed:16141072).Curated1
Sequence conflicti1623Q → K in BAE26929 (PubMed:16141072).Curated1
Sequence conflicti1623Q → K in BAE27017 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0302741 – 1594Missing in isoform 3. 1 PublicationAdd BLAST1594
Alternative sequenceiVSP_030275332 – 335ALKL → GASK in isoform 2. 1 Publication4
Alternative sequenceiVSP_030276336 – 1798Missing in isoform 2. 1 PublicationAdd BLAST1463

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AK146138 mRNA Translation: BAE26929.1 Different initiation.
AK146256 mRNA Translation: BAE27017.1 Different initiation.
AK164030 mRNA Translation: BAE37596.1
AL772316 Genomic DNA Translation: CAM17295.1
AL772316
, AL772296, AL831756, BX572638 Genomic DNA Translation: CAM17298.1
BX572638
, AL772296, AL772316, AL831756 Genomic DNA Translation: CAM18365.1
AL831756
, AL772296, AL772316, BX572638 Genomic DNA Translation: CAM20204.1
AL772296
, AL772316, AL831756, BX572638 Genomic DNA Translation: CAM26596.1
BC039622 mRNA Translation: AAH39622.1
BC057079 mRNA Translation: AAH57079.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS38798.1 [A2AKG8-1]

NCBI Reference Sequences

More...RefSeqi		NP_001074653.1, NM_001081184.1 [A2AKG8-1]

UniGene gene-oriented nucleotide sequence clusters

More...UniGenei		Mm.287210

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000097992; ENSMUSP00000095602; ENSMUSG00000038368 [A2AKG8-1]
ENSMUST00000107147; ENSMUSP00000102765; ENSMUSG00000038368 [A2AKG8-3]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		230393

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		mmu:230393

UCSC genome browser

More...UCSCi		uc008tmt.1 mouse [A2AKG8-2]
uc008tmu.1 mouse [A2AKG8-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK146138 mRNA Translation: BAE26929.1 Different initiation.
AK146256 mRNA Translation: BAE27017.1 Different initiation.
AK164030 mRNA Translation: BAE37596.1
AL772316 Genomic DNA Translation: CAM17295.1
AL772316
, AL772296, AL831756, BX572638 Genomic DNA Translation: CAM17298.1
BX572638
, AL772296, AL772316, AL831756 Genomic DNA Translation: CAM18365.1
AL831756
, AL772296, AL772316, BX572638 Genomic DNA Translation: CAM20204.1
AL772296
, AL772316, AL831756, BX572638 Genomic DNA Translation: CAM26596.1
BC039622 mRNA Translation: AAH39622.1
BC057079 mRNA Translation: AAH57079.1
CCDSiCCDS38798.1 [A2AKG8-1]
RefSeqiNP_001074653.1, NM_001081184.1 [A2AKG8-1]
UniGeneiMm.287210

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000095602

PTM databases

iPTMnetiA2AKG8
PhosphoSitePlusiA2AKG8

Proteomic databases

EPDiA2AKG8
MaxQBiA2AKG8
PaxDbiA2AKG8
PeptideAtlasiA2AKG8
PRIDEiA2AKG8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000097992; ENSMUSP00000095602; ENSMUSG00000038368 [A2AKG8-1]
ENSMUST00000107147; ENSMUSP00000102765; ENSMUSG00000038368 [A2AKG8-3]
GeneIDi230393
KEGGimmu:230393
UCSCiuc008tmt.1 mouse [A2AKG8-2]
uc008tmu.1 mouse [A2AKG8-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		54914
MGIiMGI:2676921 Focad

Rodent Unidentified Gene-Encoded large proteins database

More...Rougei		Search...

Phylogenomic databases

eggNOGiENOG410II1D Eukaryota
ENOG410YIIU LUCA
GeneTreeiENSGT00390000004438
HOGENOMiHOG000113178
HOVERGENiHBG095600
InParanoidiA2AKG8
OMAiDSHYQPR
OrthoDBi187102at2759
PhylomeDBiA2AKG8
TreeFamiTF323261

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Focad mouse

Protein Ontology

More...PROi		PR:A2AKG8

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSMUSG00000038368 Expressed in 236 organ(s), highest expression level in oocyte
ExpressionAtlasiA2AKG8 baseline and differential
GenevisibleiA2AKG8 MM

Family and domain databases

InterProiView protein in InterPro
IPR016024 ARM-type_fold
IPR022542 DUF3730
IPR021392 Focadhesin
PfamiView protein in Pfam
PF12530 DUF3730, 1 hit
PF11229 Focadhesin, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiFOCAD_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A2AKG8
Secondary accession number(s): Q0P620
, Q3TPY9, Q3UJY8, Q3UK73, Q6PGE3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 20, 2007
Last modified: February 13, 2019
This is version 77 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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