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Entry version 80 (08 May 2019)
Sequence version 1 (20 Feb 2007)
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Protein

Protein virilizer homolog

Gene

Virma

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Associated component of the WMM complex, a complex that mediates N6-methyladenosine (m6A) methylation of RNAs, a modification that plays a role in the efficiency of mRNA splicing and RNA processing. Acts as a key regulator of m6A methylation by promoting m6A methylation of mRNAs in the 3'-UTR near the stop codon: recruits the catalytic core components METTL3 and METTL14, thereby guiding m6A methylation at specific sites. Required for mRNA polyadenylation via its role in selective m6A methylation: m6A methylation of mRNAs in the 3'-UTR near the stop codon correlating with alternative polyadenylation (APA).By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein
Biological processmRNA processing, mRNA splicing

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein virilizer homologCurated
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:VirmaImported
Synonyms:Kiaa14291 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1913435 Virma

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemovedBy similarity
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003086062 – 1811Protein virilizer homologAdd BLAST1810

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2N-acetylalanineBy similarity1
Modified residuei133PhosphoserineBy similarity1
Modified residuei138PhosphoserineCombined sources1
Modified residuei173PhosphoserineCombined sources1
Modified residuei184PhosphothreonineBy similarity1
Modified residuei222PhosphoserineBy similarity1
Modified residuei913PhosphotyrosineBy similarity1
Modified residuei1578PhosphoserineCombined sources1
Modified residuei1707PhosphothreonineBy similarity1
Modified residuei1722Omega-N-methylarginineCombined sources1
Modified residuei1740Asymmetric dimethylarginine; alternateCombined sources1
Modified residuei1740Omega-N-methylarginine; alternateCombined sources1
Modified residuei1772Asymmetric dimethylarginineCombined sources1
Modified residuei1774Asymmetric dimethylarginineCombined sources1
Modified residuei1792Asymmetric dimethylarginineCombined sources1

Keywords - PTMi

Acetylation, Methylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

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EPDi
A2AIV2

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
A2AIV2

MaxQB - The MaxQuant DataBase

More...
MaxQBi
A2AIV2

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A2AIV2

PeptideAtlas

More...
PeptideAtlasi
A2AIV2

PRoteomics IDEntifications database

More...
PRIDEi
A2AIV2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
A2AIV2

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
A2AIV2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000040720 Expressed in 275 organ(s), highest expression level in embryo

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A2AIV2 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
A2AIV2 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the WMM complex, a N6-methyltransferase complex composed of a catalytic subcomplex, named MAC, and of an associated subcomplex, named MACOM (PubMed:29535189, PubMed:29547716). The MAC subcomplex is composed of METTL3 and METTL14 (PubMed:29535189, PubMed:29547716). The MACOM subcomplex is composed of WTAP, ZC3H13, CBLL1/HAKAI, VIRMA, and, in some cases of RBM15 (RBM15 or RBM15B) (PubMed:29535189, PubMed:29547716). Interacts with WTAP (By similarity). Also component of a MACOM-like complex, named WTAP complex, composed of WTAP, ZC3H13, CBLL1, VIRMA, RBM15, BCLAF1 and THRAP3 (By similarity). Interacts with NUDT21 and CPSF6 (By similarity).By similarity2 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
211281, 4 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-1609 WMM N6-adenosine-methyltransferase complex

Protein interaction database and analysis system

More...
IntActi
A2AIV2, 2 interactors

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000103943

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A2AIV2

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi139 – 202Pro-richAdd BLAST64
Compositional biasi208 – 314Glu-richAdd BLAST107
Compositional biasi942 – 945Poly-Pro4

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the vir family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4822 Eukaryota
ENOG410XSTI LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000002833

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A2AIV2

KEGG Orthology (KO)

More...
KOi
K22910

Identification of Orthologs from Complete Genome Data

More...
OMAi
CRDGTYK

Database of Orthologous Groups

More...
OrthoDBi
210051at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A2AIV2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR031801 VIR_N
IPR026736 Virilizer

The PANTHER Classification System

More...
PANTHERi
PTHR23185 PTHR23185, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF15912 VIR_N, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: A2AIV2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MAVDSSMELL FLDTFKHPSA EQSSHIDVVR FPCVVYINEV RVIPPGVRAH
60 70 80 90 100
SGLPDNRAYG ETSPHTFQLD LFFNNVSKPS APVFDRLGSL EYDENTSIIF
110 120 130 140 150
RPNSKVNTDG LVLRGWYNCL TLAIYGSVDR VISHDRDSPP PPPPPPPPPQ
160 170 180 190 200
PQPTLKRNLK HADGEKEDQF NGSPPRPQPR GPRTPPGPPP PDDDEDDPMS
210 220 230 240 250
LPVSGDKEED VPHREDYFEP ISPDRNSVPQ EGQYSDEGEV EEEPQEEGED
260 270 280 290 300
DEDDVDVEEE EDEDEDDCHT VDSIPDDEEE DEEEEGEEDE EGEGDDGYEQ
310 320 330 340 350
ISSDEDGIAD LERETFKYPN FDVEYTPEDL ASVPPMTYDP YDRELAPLLY
360 370 380 390 400
FSCPYKTTFE IEISRMKDQG PDKENSGAVE ASVKLTELLD LYQEDRGAKW
410 420 430 440 450
VTALEEIPSL IIKGLSYLQL KNTEQDSLGQ LVDWTMQALN LQVAFRQPIA
460 470 480 490 500
LNVRQLKAGT KLVTSLAECG APGVTELLQA GVINVLFDLL FADHVSSSLK
510 520 530 540 550
LNAFKALDSV ISMTEGMEAF LRSTQNEKSG YQRLLELILL DQTVRVVTAG
560 570 580 590 600
SAILQKCHFY EILSEIKRLG DHIAEKTSAV PNHSEPDQDT DAVLERANPD
610 620 630 640 650
YENEVEASMD MDLLESSIIS EGEIEKLTNL LEEVFHVMET APHTMTQPPV
660 670 680 690 700
KSFPTIARIT GPPERDDPYP VLFRYLHSHH FLELVTLLLS IPITSAHQGV
710 720 730 740 750
LQATKDVLKF LAQSQKGLLF FMSEYEATNL LIRALCHLYD QDEEEGLQSD
760 770 780 790 800
GADDAFALWL QDSTQTLQCI TELFSHFQRC TASEETDHSD LLGTLHNLYL
810 820 830 840 850
ITFNPVGRSA VGHVFSLDKN LQSLITLMEY YSKEALGDSK SKKSVAYNYA
860 870 880 890 900
CVLTLVVAQS SSGVQMLEQH AASLLKLCKA DENNAKLQEL GKWLEPLKNL
910 920 930 940 950
RFEINCIPNL IEYVKQNIDN LMTAEGVGLT TALRVLCNVA CPPPPVEGQQ
960 970 980 990 1000
KDLKWNLAVI QLFSAEGMDT FIRVLQKLNS ILTQPWRLHV NMGTTLHRVT
1010 1020 1030 1040 1050
TISMARCTLT LLKTMLTELL RGGSFEFKDM RVPSALVTLH MLLCSIPLSG
1060 1070 1080 1090 1100
RLDSDEQKIQ NDIIDILLTF TQGVNEKLTI SEETLANNTW SLMLKEVLSS
1110 1120 1130 1140 1150
ILKVPEGFFS GLILLSELLP LPLPMQTTQV IEPHDISVAL NTRKLWSMHL
1160 1170 1180 1190 1200
HVQAKLLQEI VRSFSGTTCQ PIQHMLRRIC VQLCDLASPT ALLIMRTVLD
1210 1220 1230 1240 1250
LIVEDLQSTS EDKEKQYTSQ TTRLLALLDA LASHKACKLA ILHLINGTIK
1260 1270 1280 1290 1300
GDERYAEIFQ DLLALVRSPG DSVTRQQCVE YVTSILQSLC DQDIALILPS
1310 1320 1330 1340 1350
PSEGPASELE QLSNSLPSKE LMTAICDCLL ATLANSESSY NCLLTCVRTM
1360 1370 1380 1390 1400
MFLAEHDYGL FHLKSSLRKN SSALHSLLKR VVSTFSKDTG ELASASLDFM
1410 1420 1430 1440 1450
RQILNADAMG CCGDDSGLME VEGAHPPRTM SLNAAELKQL LQSKEESPES
1460 1470 1480 1490 1500
LFLELEKLVL EHSKDDDSLE SLLDNVIGLK QMLESSGEPL PLSDQDVEPV
1510 1520 1530 1540 1550
LSAPESLQNL FNNRTAYVLA DVMDDQLKSM WFTPFQAEEI DTDLDLVKVD
1560 1570 1580 1590 1600
LIELSEKCCS DFDLHSELER SFLSEPSSPG RSKTTKGFKL GKHKHETFIT
1610 1620 1630 1640 1650
SSGKSEYIEP AKRAHVVPPP RGRGRGGFGQ GIRPHDIFRQ RKQNTSRPPS
1660 1670 1680 1690 1700
MHVDDFVAAE SKEVVPQDGI PPPKRPLKVS QKISSRGGFS GNRGGRGAFH
1710 1720 1730 1740 1750
SQNRFFTPPA SKGNYSRREG TRGSSWSAQN TPRGNYNESR GGQSNFNRGP
1760 1770 1780 1790 1800
LPPLRPLSST GYRPSPRDRA SRGRGGLGPS WASTNSGSGG SRGKFVSGGS
1810
GRGRHVRSFT R
Length:1,811
Mass (Da):201,439
Last modified:February 20, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5F505FADEC3211E3
GO
Isoform 2 (identifier: A2AIV2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1131-1139: IEPHDISVA → PLHITCILS
     1140-1811: Missing.

Show »
Length:1,139
Mass (Da):127,461
Checksum:i90063C903B5C0D85
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
E9PZY8E9PZY8_MOUSE
Protein virilizer homolog
Virma 1110037F02Rik
1,861Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAH28830 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti97S → Y in BAE41548 (PubMed:16141072).Curated1
Sequence conflicti373K → E in BAC35017 (PubMed:16141072).Curated1
Sequence conflicti1520A → T in AAH28830 (PubMed:15489334).Curated1
Sequence conflicti1582S → T in AAH28830 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0290221131 – 1139IEPHDISVA → PLHITCILS in isoform 2. 1 Publication9
Alternative sequenceiVSP_0290231140 – 1811Missing in isoform 2. 1 PublicationAdd BLAST672

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK012768 mRNA Translation: BAB28456.1
AK052499 mRNA Translation: BAC35017.2
AK155623 mRNA Translation: BAE33351.1
AK162531 mRNA Translation: BAE36958.1
AK170075 mRNA Translation: BAE41548.1
AL732538 Genomic DNA No translation available.
AL772170 Genomic DNA No translation available.
AK122509 mRNA Translation: BAC65791.1
BC028830 mRNA Translation: AAH28830.1 Different initiation.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS84705.1 [A2AIV2-1]

NCBI Reference Sequences

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RefSeqi
NP_001333984.1, NM_001347055.1 [A2AIV2-1]

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000055372; ENSMUSP00000063188; ENSMUSG00000040720 [A2AIV2-2]
ENSMUST00000059914; ENSMUSP00000058078; ENSMUSG00000040720 [A2AIV2-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
66185

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:66185

UCSC genome browser

More...
UCSCi
uc008rzo.1 mouse [A2AIV2-2]
uc008rzq.1 mouse [A2AIV2-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK012768 mRNA Translation: BAB28456.1
AK052499 mRNA Translation: BAC35017.2
AK155623 mRNA Translation: BAE33351.1
AK162531 mRNA Translation: BAE36958.1
AK170075 mRNA Translation: BAE41548.1
AL732538 Genomic DNA No translation available.
AL772170 Genomic DNA No translation available.
AK122509 mRNA Translation: BAC65791.1
BC028830 mRNA Translation: AAH28830.1 Different initiation.
CCDSiCCDS84705.1 [A2AIV2-1]
RefSeqiNP_001333984.1, NM_001347055.1 [A2AIV2-1]

3D structure databases

SMRiA2AIV2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi211281, 4 interactors
ComplexPortaliCPX-1609 WMM N6-adenosine-methyltransferase complex
IntActiA2AIV2, 2 interactors
STRINGi10090.ENSMUSP00000103943

PTM databases

iPTMnetiA2AIV2
PhosphoSitePlusiA2AIV2

Proteomic databases

EPDiA2AIV2
jPOSTiA2AIV2
MaxQBiA2AIV2
PaxDbiA2AIV2
PeptideAtlasiA2AIV2
PRIDEiA2AIV2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000055372; ENSMUSP00000063188; ENSMUSG00000040720 [A2AIV2-2]
ENSMUST00000059914; ENSMUSP00000058078; ENSMUSG00000040720 [A2AIV2-1]
GeneIDi66185
KEGGimmu:66185
UCSCiuc008rzo.1 mouse [A2AIV2-2]
uc008rzq.1 mouse [A2AIV2-1]

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
25962
MGIiMGI:1913435 Virma

Rodent Unidentified Gene-Encoded large proteins database

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Rougei
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Phylogenomic databases

eggNOGiKOG4822 Eukaryota
ENOG410XSTI LUCA
GeneTreeiENSGT00390000002833
InParanoidiA2AIV2
KOiK22910
OMAiCRDGTYK
OrthoDBi210051at2759
PhylomeDBiA2AIV2

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
1110037F02Rik mouse

Protein Ontology

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PROi
PR:A2AIV2

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000040720 Expressed in 275 organ(s), highest expression level in embryo
ExpressionAtlasiA2AIV2 baseline and differential
GenevisibleiA2AIV2 MM

Family and domain databases

InterProiView protein in InterPro
IPR031801 VIR_N
IPR026736 Virilizer
PANTHERiPTHR23185 PTHR23185, 1 hit
PfamiView protein in Pfam
PF15912 VIR_N, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiVIR_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A2AIV2
Secondary accession number(s): A2AIV1
, Q3TDQ3, Q3TRR9, Q3U1Z2, Q80TD6, Q8C758, Q8K151, Q9CSI3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: February 20, 2007
Last modified: May 8, 2019
This is version 80 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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