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Entry version 74 (13 Feb 2019)
Sequence version 1 (20 Feb 2007)
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Protein

Uncharacterized protein C1orf87 homolog

Gene

Gm12695

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Uncharacterized protein C1orf87 homolog
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Gm12695
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

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MGIi
MGI:3650206 Gm12695

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002844901 – 545Uncharacterized protein C1orf87 homologAdd BLAST545

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
A2AGB2

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A2AGB2

PRoteomics IDEntifications database

More...
PRIDEi
A2AGB2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
A2AGB2

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
A2AGB2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000078639 Expressed in 5 organ(s), highest expression level in testis

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
A2AGB2

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
A2AGB2

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410IF8Q Eukaryota
ENOG41128Q6 LUCA

Ensembl GeneTree

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GeneTreei
ENSGT00390000008678

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000111231

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG101967

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A2AGB2

Identification of Orthologs from Complete Genome Data

More...
OMAi
GSKHFRY

Database of Orthologous Groups

More...
OrthoDBi
950399at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A2AGB2

TreeFam database of animal gene trees

More...
TreeFami
TF338576

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR040774 DUF5580
IPR011992 EF-hand-dom_pair

The PANTHER Classification System

More...
PANTHERi
PTHR34830 PTHR34830, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF17743 DUF5580, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF47473 SSF47473, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A2AGB2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSPWKTSQS SVPMPEMIVK IVGSKHFRYF IEKPMNKQNE KLKTEPQTSL
60 70 80 90 100
QKPRNDYSRR VSRDLPGPTD SSEQQITANP AEKEESKHQR SSLKPESNQK
110 120 130 140 150
FLTRVFSNRF LDGRISYEAN VHCSSVPTGD QSLSYMHSLP RRKSVGWCLE
160 170 180 190 200
HTAKDSSGQA EEIVQRPSVM TREDSFLTTL VRRELNSRPL SSNLLDKLQK
210 220 230 240 250
ELKTLDPISS GFLHQSQLSC LFLRHKVPLP LLTVKLLCQR FSRRCSPEMV
260 270 280 290 300
NYGEVLCFLK EATKDNLQQN GTAGYSNSRK TSSPSYHKQS IPPQDSSLLS
310 320 330 340 350
EVNKSLLEIL KMALRPCQGK LSIDCLNMSF RKEDHSFSGC LPLPKVISIC
360 370 380 390 400
SKHGLYVTMT LLETLLHHQE LGYRGEIKWK NFVKWLNRAS ADLSCDMPAG
410 420 430 440 450
KNKKETQGDL VDIPERPQRK TEHVKTPEEN LQTKNPTTMT SAPEDPVTFF
460 470 480 490 500
KNRPVSQPVE HLAVKKDGQS ELWIDRFRKL ENALYLCDLS NTGVLERERA
510 520 530 540
RRLIHNYNLI YSLSLSPRRI NQALQRYRSG ENIILEPALQ YLKEL
Length:545
Mass (Da):62,440
Last modified:February 20, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFB0BAFF53A87CDFB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AL683816, AL772139 Genomic DNA Translation: CAM13967.1
AL772139, AL683816 Genomic DNA Translation: CAM27277.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS38815.1

NCBI Reference Sequences

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RefSeqi
NP_001074753.1, NM_001081284.1
XP_006503324.1, XM_006503261.1

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.439625

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000107071; ENSMUSP00000102686; ENSMUSG00000078639

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
620779

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:620779

UCSC genome browser

More...
UCSCi
uc008ttm.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL683816, AL772139 Genomic DNA Translation: CAM13967.1
AL772139, AL683816 Genomic DNA Translation: CAM27277.1
CCDSiCCDS38815.1
RefSeqiNP_001074753.1, NM_001081284.1
XP_006503324.1, XM_006503261.1
UniGeneiMm.439625

3D structure databases

ProteinModelPortaliA2AGB2
SMRiA2AGB2
ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiA2AGB2
PhosphoSitePlusiA2AGB2

Proteomic databases

MaxQBiA2AGB2
PaxDbiA2AGB2
PRIDEiA2AGB2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000107071; ENSMUSP00000102686; ENSMUSG00000078639
GeneIDi620779
KEGGimmu:620779
UCSCiuc008ttm.1 mouse

Organism-specific databases

MGIiMGI:3650206 Gm12695

Phylogenomic databases

eggNOGiENOG410IF8Q Eukaryota
ENOG41128Q6 LUCA
GeneTreeiENSGT00390000008678
HOGENOMiHOG000111231
HOVERGENiHBG101967
InParanoidiA2AGB2
OMAiGSKHFRY
OrthoDBi950399at2759
PhylomeDBiA2AGB2
TreeFamiTF338576

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Gm12695 mouse

Protein Ontology

More...
PROi
PR:A2AGB2

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000078639 Expressed in 5 organ(s), highest expression level in testis

Family and domain databases

InterProiView protein in InterPro
IPR040774 DUF5580
IPR011992 EF-hand-dom_pair
PANTHERiPTHR34830 PTHR34830, 1 hit
PfamiView protein in Pfam
PF17743 DUF5580, 1 hit
SUPFAMiSSF47473 SSF47473, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCA087_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A2AGB2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: February 20, 2007
Last modified: February 13, 2019
This is version 74 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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