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Entry version 84 (25 May 2022)
Sequence version 1 (06 Feb 2007)
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Protein

Neurexin-3b

Gene

nrxn3b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi300CalciumBy similarity1
Metal bindingi317Calcium; via carbonyl oxygenBy similarity1
Metal bindingi380Calcium; via carbonyl oxygenBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processAngiogenesis, Cell adhesion
LigandCalcium, Metal-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Neurexin-3b
Alternative name(s):
Neurexin IIIb-alpha
Neurexin-3b-alpha
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:nrxn3b
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7955 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesDanionidaeDanioninaeDanio
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000437 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unplaced

Organism-specific databases

Zebrafish Information Network genome database

More...
ZFINi
ZDB-GENE-070206-10, nrxn3b

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini24 – 1610ExtracellularSequence analysisAdd BLAST1587
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1611 – 1631HelicalSequence analysisAdd BLAST21
Topological domaini1632 – 1686CytoplasmicSequence analysisAdd BLAST55

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 23Sequence analysisAdd BLAST23
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000041255324 – 1686Neurexin-3bAdd BLAST1663

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi198 ↔ 209By similarity
Disulfide bondi203 ↔ 218By similarity
Disulfide bondi220 ↔ 230By similarity
Disulfide bondi415 ↔ 451By similarity
Disulfide bondi621 ↔ 650By similarity
Disulfide bondi658 ↔ 669By similarity
Disulfide bondi663 ↔ 678By similarity
Disulfide bondi680 ↔ 690By similarity
Disulfide bondi1020 ↔ 1048By similarity
Disulfide bondi1055 ↔ 1066By similarity
Disulfide bondi1060 ↔ 1075By similarity
Disulfide bondi1077 ↔ 1087By similarity

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A1XQY1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

After the very early developmental stages, the expression levels decrease and remain relatively constant until around 24 h, with the onset of an increase of expression that continues till the larval stages.1 Publication

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
7955.ENSDARP00000107689

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

AlphaFold Protein Structure Database

More...
AlphaFoldDBi
A1XQY1

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A1XQY1

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini24 – 198Laminin G-like 1PROSITE-ProRule annotationAdd BLAST175
Domaini194 – 231EGF-like 1PROSITE-ProRule annotationAdd BLAST38
Domaini254 – 451Laminin G-like 2PROSITE-ProRule annotationAdd BLAST198
Domaini458 – 650Laminin G-like 3PROSITE-ProRule annotationAdd BLAST193
Domaini654 – 691EGF-like 2PROSITE-ProRule annotationAdd BLAST38
Domaini696 – 859Laminin G-like 4PROSITE-ProRule annotationAdd BLAST164
Domaini876 – 1048Laminin G-like 5PROSITE-ProRule annotationAdd BLAST173
Domaini1051 – 1088EGF-like 3PROSITE-ProRule annotationAdd BLAST38
Domaini1092 – 1292Laminin G-like 6PROSITE-ProRule annotationAdd BLAST201

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1324 – 1348DisorderedSequence analysisAdd BLAST25
Regioni1501 – 1545DisorderedSequence analysisAdd BLAST45
Regioni1653 – 1686DisorderedSequence analysisAdd BLAST34

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1653 – 1668Polar residuesSequence analysisAdd BLAST16
Compositional biasi1669 – 1686Basic and acidic residuesSequence analysisAdd BLAST18

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the neurexin family.Curated

Keywords - Domaini

EGF-like domain, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3514, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A1XQY1

Database of Orthologous Groups

More...
OrthoDBi
35129at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A1XQY1

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00110, LamG, 6 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR013320, ConA-like_dom_sf
IPR000742, EGF-like_dom
IPR001791, Laminin_G
IPR003585, Neurexin-like
IPR027789, Syndecan/Neurexin_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02210, Laminin_G_2, 6 hits
PF01034, Syndecan, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00294, 4.1m, 1 hit
SM00181, EGF, 3 hits
SM00282, LamG, 6 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49899, SSF49899, 6 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50026, EGF_3, 3 hits
PS50025, LAM_G_DOMAIN, 6 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 3 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative promoter usage and alternative splicing. AlignAdd to basket
Note: A number of isoforms, alpha-type and beta-type are produced by alternative promoter usage. Beta-type isoforms differ from alpha-type isoforms in their N-terminus.

This entry has 3 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1a (identifier: A1XQY1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <p><strong>What is the canonical sequence?</strong><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MPPHCQPHCV LLLLSTFLSL GLGLEFTGSE GQWARYLRWD ASTRSDLSFQ
60 70 80 90 100
FKTAISDALV LYFDDGGYCD FLLLSIEDAK LKLRFSVDCA ETTITSDKMV
110 120 130 140 150
NDSHWHFATI SRHNLRTVLA LDGDSKVDEV RPQRQFMKIV SDLYLGGVPQ
160 170 180 190 200
DIRTSALTLP AAKEMPPFKG IITDLGYGNK VPTRLGSQKV RLEMEGFCTE
210 220 230 240 250
NPCENGGSCS MADGEAYCDC SKTGYTGRYC NEAVNKTPGF AHMVKSPQAR
260 270 280 290 300
EENVATFRGS EYFCYDLSQN PIQSSSDEIT LSFKTWQRNG LILHTGKSAD
310 320 330 340 350
YVNLALKDGA VSLVINLGSG AFEAIVEPVN GKFNDNAWHD IKVTRNLRQH
360 370 380 390 400
SGIGHAMVNK LHCLVTISVD GILTTTGYTQ EDYTMLGSDD FFYVGGSPST
410 420 430 440 450
ADLPGSPVSN NFMGCLKEVV YKNNDIRLEL SRLARIADPK MKLQGDIVFK
460 470 480 490 500
CENVPTLDPI SFETAESFLG LPKWNTKRVG SISFDFRTSE PNGLILFTQG
510 520 530 540 550
KPQDKKDSRS QRSNKVDFFA VELLDGHLYL LLDMGSGTIK VKATQNKVND
560 570 580 590 600
GVWHHVDIQR DGRSGIISVN SRRTPFTASG ENEILDLEGN LYLGGLPDNR
610 620 630 640 650
ADLILPTELW TAMLNYGYVG CIRDLFIDGR SKDIRQIAEA QNVGGIKSSC
660 670 680 690 700
SKVTAKQCDS NSCKNNGICK EGWNRFICDC TGTGYWDRTC EREASILSYD
710 720 730 740 750
GSMYMKVVMP TIIHTEAEDV SLRFMSQRAF GLLMAATSRE SADTLRLELD
760 770 780 790 800
SGRVKLIVNL GKGPETLYAG QKVNDNDWHS VRVTRRGKNI KLMVDDDVAE
810 820 830 840 850
GQMNGDHTRL EFSNVETGIL TERRFASTAP SNFIGHLQGL KFNGLLYIDM
860 870 880 890 900
CKNGDIEFCE LNARFGMRSI VADPVTFKTK GSYLGLATLQ AYSTMHLFFQ
910 920 930 940 950
FKTTSGDGFI LFNSGDGNDF IAVELVKGYI HYVFNLGNGP SLLKGNSDSP
960 970 980 990 1000
LNDNQWHNVV ITRDASNTHT LKVDAKSVSQ VVNGAKNLDL KGDLFVAGLG
1010 1020 1030 1040 1050
PNMYQNLPKL VVPREGFQGC LASMDLNGRL PDLINDALFR SGQIERGCEG
1060 1070 1080 1090 1100
PSTTCQEDSC ANMGVCIQQW ENFTCDCSMT SYSGTQCNDP GATYIFGKGG
1110 1120 1130 1140 1150
GLIMYTWPNN ERPSTRTDRL AVGFSTTIKD GILVRIDSAP RLGDYIMLHI
1160 1170 1180 1190 1200
EEGKVCVTFN IGTVDISVKE MTTEVNDGKY HVVRFTRNGG NATLQVDNWP
1210 1220 1230 1240 1250
INEHFPSGNS DIERFQMANK KIPFKYTRPV EDWLHEKDRQ LTIFNTQATI
1260 1270 1280 1290 1300
SIGGNDRKRP YQGQLSGLYY NGLKVLNMAA EGHTNIKING SVRLVGDVPT
1310 1320 1330 1340 1350
SRSPSRTTTS MPPEMSTTFI ETTTTLSTTT TRKQRSPPTI QTTDDIVSSA
1360 1370 1380 1390 1400
ECSSDDEDLE ECDGGHTGGE LVIPVLVEDP IDIPPISTRV PFIPLPPTLH
1410 1420 1430 1440 1450
PVLTIIETTK ESLSIATEAG VPCFSDQGRD DCDDDDGDDD DGDGLVISGF
1460 1470 1480 1490 1500
GSGEVFDSSL PPTDDEDFYT TFSLVTDKIL TTSTYEGGYK ALAPKWEEKD
1510 1520 1530 1540 1550
FKPKKPSEVG RITAIPPLPD LRSSAASPVR PEPAPKIPAG KMNNREVKPQ
1560 1570 1580 1590 1600
PDIVLLPLPT SFDMDGTKPK GPYITQPMLR TIPSALPTVP GIRRVPPGAS
1610 1620 1630 1640 1650
EVIRESSSTT GMVVGIVSAA ALCILILLYA MYKYRNRDEG SYQVDETRNY
1660 1670 1680
ISNSAQNNGT VVKDKQPSTK GASNKRPKDK DKEYYV
Length:1,686
Mass (Da):185,768
Last modified:February 6, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5A273F4741B68073
GO
Isoform 2a (identifier: A1XQY1-2) [UniParc]FASTAAdd to basket
Also known as: Soluble form

The sequence of this isoform differs from the canonical sequence as follows:
     1368-1403: GGELVIPVLVEDPIDIPPISTRVPFIPLPPTLHPVL → AQSSFATRTLRTALTWTWQLMYTFTSIYFISYLVCS
     1404-1686: Missing.

Note: Produced by alternative splicing.Curated
Show »
Length:1,403
Mass (Da):155,463
Checksum:iB063871D4718D9A1
GO
Isoform 1b (identifier: A1XQY3-1) [UniParc]FASTAAdd to basket
The sequence of this isoform can be found in the external entry A1XQY3.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Length:675
Mass (Da):73,888
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F1R5P7F1R5P7_DANRE
Neurexin-3b
nrxn3b
1,687Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F1QRL7F1QRL7_DANRE
Neurexin-3b
nrxn3b
1,404Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F8W2B3F8W2B3_DANRE
Neurexin-3b
nrxn3b
692Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1013P → S in ABG25173 (PubMed:17041151).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0417081368 – 1403GGELV…LHPVL → AQSSFATRTLRTALTWTWQL MYTFTSIYFISYLVCS in isoform 2a. 1 PublicationAdd BLAST36
Alternative sequenceiVSP_0417091404 – 1686Missing in isoform 2a. 1 PublicationAdd BLAST283

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DQ641435 mRNA Translation: ABG25172.1
DQ641436 mRNA Translation: ABG25173.1

NCBI Reference Sequences

More...
RefSeqi
NP_001073516.1, NM_001080047.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
570698

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
dre:570698

Keywords - Coding sequence diversityi

Alternative promoter usage, Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ641435 mRNA Translation: ABG25172.1
DQ641436 mRNA Translation: ABG25173.1
RefSeqiNP_001073516.1, NM_001080047.1

3D structure databases

AlphaFoldDBiA1XQY1
SMRiA1XQY1
ModBaseiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000107689

Proteomic databases

PaxDbiA1XQY1

Genome annotation databases

GeneIDi570698
KEGGidre:570698

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
570698
ZFINiZDB-GENE-070206-10, nrxn3b

Phylogenomic databases

eggNOGiKOG3514, Eukaryota
InParanoidiA1XQY1
OrthoDBi35129at2759
PhylomeDBiA1XQY1

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
nrxn3b, zebrafish

Family and domain databases

CDDicd00110, LamG, 6 hits
InterProiView protein in InterPro
IPR013320, ConA-like_dom_sf
IPR000742, EGF-like_dom
IPR001791, Laminin_G
IPR003585, Neurexin-like
IPR027789, Syndecan/Neurexin_dom
PfamiView protein in Pfam
PF02210, Laminin_G_2, 6 hits
PF01034, Syndecan, 1 hit
SMARTiView protein in SMART
SM00294, 4.1m, 1 hit
SM00181, EGF, 3 hits
SM00282, LamG, 6 hits
SUPFAMiSSF49899, SSF49899, 6 hits
PROSITEiView protein in PROSITE
PS50026, EGF_3, 3 hits
PS50025, LAM_G_DOMAIN, 6 hits

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNR3BA_DANRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A1XQY1
Secondary accession number(s): A1XQY2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 21, 2011
Last sequence update: February 6, 2007
Last modified: May 25, 2022
This is version 84 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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