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Protein
Submitted name:

Nyctalopin

Gene

Nyx

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
NyctalopinImported
Submitted name:
Nyctalopin (Predicted)Imported
Gene namesi
Name:NyxImported
Synonyms:Nyx_predictedImported
ORF Names:rCG_42945Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1561300 Nyx

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_501528504819 – 476Sequence analysisAdd BLAST458

Proteomic databases

PRIDEiA1XIQ3

Expressioni

Gene expression databases

BgeeiENSRNOG00000009646 Expressed in 4 organ(s), highest expression level in heart

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013382

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 61LRRNTInterPro annotationAdd BLAST37
Domaini331 – 382LRRCTInterPro annotationAdd BLAST52

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG4237 Eukaryota
COG4886 LUCA
GeneTreeiENSGT00930000150867
HOGENOMiHOG000230477
HOVERGENiHBG031762
KOiK08129
OMAiFRNPWEC
OrthoDBiEOG091G05RT
TreeFamiTF337463

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR000483 Cys-rich_flank_reg_C
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
IPR000372 LRRNT
PfamiView protein in Pfam
PF13855 LRR_8, 2 hits
SMARTiView protein in SMART
SM00369 LRR_TYP, 9 hits
SM00082 LRRCT, 1 hit
SM00013 LRRNT, 1 hit

Sequencei

Sequence statusi: Complete.

A1XIQ3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLNLLLYAVV FSLPCTRATE ACLRACPAAC TCSNVERGCS VRCDRAGLQR
60 70 80 90 100
VPTEFPCEAA SIDLDRNGLR ILGERAFGTL PSLRCLSLRH NNLSFITPGA
110 120 130 140 150
FKGLPRLAEL RLAHNGELRY LHVRTFAALG RLRRLDLAAC RLFSVPERLL
160 170 180 190 200
AELPALRELT AFDNLFRRVP GALRGLANLT HAHFERSRIE AVASSSLLGM
210 220 230 240 250
RRLRSLSLQA NRVRAVHAGA FGDCVALEHL LLNDNLLASL PAAAFRGLRR
260 270 280 290 300
LRTLNLGGNA LGSVARGWFS DLAELELLYL DRNSITFVEE GAFQNLSGLL
310 320 330 340 350
ALHLNGNRLT VLSWAAFQPG FFLGRLFLFR NPWRCDCHLE WLRDWMEGSG
360 370 380 390 400
RVADVACASP GSVAGQDLSQ VVFERSSDGI CVDPDELNFT TFSPGPSPEP
410 420 430 440 450
VATTVSRFSS LLSKLLAPRA PVEEVANTTW ELVNVSLNDS FRSHGVMVMC
460 470
YKATFLFTSC LWLSLAQYVV LGPQRD
Length:476
Mass (Da):52,471
Last modified:February 6, 2007 - v1
Checksum:i0E80942CC3657497
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07037036 Genomic DNA No translation available.
DQ393414 mRNA Translation: ABD52240.1
CH474009 Genomic DNA Translation: EDL97655.1
RefSeqiNP_001094437.1, NM_001100967.1
UniGeneiRn.153545

Genome annotation databases

EnsembliENSRNOT00000013382; ENSRNOP00000013382; ENSRNOG00000009646
GeneIDi302516
KEGGirno:302516
UCSCiRGD:1561300 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07037036 Genomic DNA No translation available.
DQ393414 mRNA Translation: ABD52240.1
CH474009 Genomic DNA Translation: EDL97655.1
RefSeqiNP_001094437.1, NM_001100967.1
UniGeneiRn.153545

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013382

Proteomic databases

PRIDEiA1XIQ3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000013382; ENSRNOP00000013382; ENSRNOG00000009646
GeneIDi302516
KEGGirno:302516
UCSCiRGD:1561300 rat

Organism-specific databases

CTDi60506
RGDi1561300 Nyx

Phylogenomic databases

eggNOGiKOG4237 Eukaryota
COG4886 LUCA
GeneTreeiENSGT00930000150867
HOGENOMiHOG000230477
HOVERGENiHBG031762
KOiK08129
OMAiFRNPWEC
OrthoDBiEOG091G05RT
TreeFamiTF337463

Gene expression databases

BgeeiENSRNOG00000009646 Expressed in 4 organ(s), highest expression level in heart

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR000483 Cys-rich_flank_reg_C
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
IPR000372 LRRNT
PfamiView protein in Pfam
PF13855 LRR_8, 2 hits
SMARTiView protein in SMART
SM00369 LRR_TYP, 9 hits
SM00082 LRRCT, 1 hit
SM00013 LRRNT, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA1XIQ3_RAT
AccessioniPrimary (citable) accession number: A1XIQ3
Entry historyiIntegrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: November 7, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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