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Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei96NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotation
Ordered Locus Names:Maqu_0925
OrganismiMarinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)
Taxonomic identifieri351348 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeMarinobacter
Proteomesi
  • UP000000998 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001498461 – 351tRNA pseudouridine synthase DAdd BLAST351

Interactioni

Protein-protein interaction databases

STRINGi351348.Maqu_0925

Structurei

3D structure databases

ProteinModelPortaliA1TZ52
SMRiA1TZ52
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini174 – 304TRUDUniRule annotationAdd BLAST131

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106NZV Bacteria
COG0585 LUCA
HOGENOMiHOG000224848
KOiK06176
OMAiGNRFFMR
OrthoDBiPOG091H03KK

Family and domain databases

HAMAPiMF_01082 TruD, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR001656 PsdUridine_synth_TruD
IPR020119 PsdUridine_synth_TruD_CS
IPR011760 PsdUridine_synth_TruD_insert
PANTHERiPTHR13326 PTHR13326, 4 hits
PfamiView protein in Pfam
PF01142 TruD, 2 hits
SUPFAMiSSF55120 SSF55120, 1 hit
PROSITEiView protein in PROSITE
PS50984 TRUD, 1 hit
PS01268 UPF0024, 1 hit

Sequencei

Sequence statusi: Complete.

A1TZ52-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEDSQWLLD WPVSGGARAG RAELKTSPED FRVTESLWPT REDDAAASGP
60 70 80 90 100
VEVSGDGEHL CLRLEKTGDN TEYVARELAA LAGCRSFDVG FCGLKDRHAV
110 120 130 140 150
TVQWFSLYRP GQEADDQALM AEVGQRWPVR AAVRHSRKLR RGDHQANGFE
160 170 180 190 200
IVLRNVTGQR ELVEAGLERL ASQGAPNYFG PQRFGFQGGN LDRAVQIDPS
210 220 230 240 250
RLNRKRGRAG RSASKNVLYF SAARSWLFNQ VLAERVSNRT WTEVLPGEPE
260 270 280 290 300
PSGAGPTGPL WGDGGTLASG EQETLERGVV DACPGLARLF QSTRMKPERR
310 320 330 340 350
PLVAHPGEFK WQWLDTTTLR VQFVLSPGQY ATTVLGDLFE LEDLSLSRDN

K
Length:351
Mass (Da):38,863
Last modified:February 6, 2007 - v1
Checksum:iEFA5FE0B8FC72BD7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000514 Genomic DNA Translation: ABM18021.1
RefSeqiWP_011784441.1, NC_008740.1

Genome annotation databases

EnsemblBacteriaiABM18021; ABM18021; Maqu_0925
KEGGimaq:Maqu_0925

Similar proteinsi

Entry informationi

Entry nameiTRUD_MARHV
AccessioniPrimary (citable) accession number: A1TZ52
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: February 6, 2007
Last modified: April 25, 2018
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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