slbp2

Functionⁱ

GO - Molecular functionⁱ

mRNA binding Source: InterPro

View the complete GO annotation on QuickGO ...

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Stem-loop-binding protein 2Imported Submitted name: Zgc:158856Imported
Gene namesⁱ	Name:slbp2Imported ORF Names:zgc:158856Imported
Organismⁱ	Danio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifierⁱ	7955 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Osteoglossocephalai › Clupeocephala › Otomorpha › Ostariophysi › Otophysi › Cypriniphysae › Cypriniformes › Cyprinoidea › Cyprinidae › Danio
Proteomesⁱ	UP000000437 Componentⁱ: Chromosome 21

Organism-specific databases

ZFINⁱ	ZDB-GENE-070112-1722 slbp2

ZFINⁱ

ZDB-GENE-070112-1722 slbp2

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSDARG00000069428 Expressed in 20 organ(s), highest expression level in blastula

Bgeeⁱ

ENSDARG00000069428 Expressed in 20 organ(s), highest expression level in blastula

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	7955.ENSDARP00000091825

STRINGⁱ

7955.ENSDARP00000091825

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	132 – 198	SLBP_RNA_bindInterPro annotationAdd BLAST		67

Phylogenomic databases

eggNOGⁱ	KOG3934 Eukaryota ENOG41122ZE LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00390000008738
KEGG Orthology (KO) More...KOⁱ	K18710
OMAⁱ	SILERCI
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0LT8
TreeFamⁱ	TF316521

Family and domain databases

Gene3Dⁱ	1.10.8.1120, 1 hit
InterProⁱ	View protein in InterPro IPR026502 SLBP1/SLBP2 IPR029344 SLBP_RNA_bind IPR038294 SLBP_RNA_bind_sf
PANTHERⁱ	PTHR17408 PTHR17408, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF15247 SLBP_RNA_bind, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

A1L2F4-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MTTRIESLLQ SPFESRLGLP LHLWPTDVAQ DFSSKTLSLP CSPEPWLLPG 
        60         70         80         90        100
CSSVYDSLVS CSKTPLSASQ NGEKPSAVQK PRRSSILERC ILRMSTASVA 
       110        120        130        140        150
VGTEDLDGVK RSPSRGKWYP HNADPSHFEI NEAVLKRRQK QIQYGKNTCG 
       160        170        180        190        200
YQNYVQQVPK RLRVPGIHPS TPNKYRKYSR RSWDMQVRLW RRALHAWDLP 
       210        220        230        240        250
SASQNDTEGQ DPVDQLQSLL EKMNTELSDG GEKEDMKWEM APDSMTSIIS 
       260        270        280        290        300
QPSEISTDGP WLASNALQIG ASSHLNQSSQ HGLGYTFSNQ QTAQENVLGW 
       310        320 
LRFLLETDHN QTQAPLLPEE PFWRIA

Length:326

Mass (Da):36,787

Last modified:February 6, 2007 - v1

Checksum:ⁱ638E58E13ED91D0A

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CT027639 Genomic DNA No translation available. CU462984 Genomic DNA No translation available. BC129495 mRNA Translation: AAI29496.1
NCBI Reference Sequences More...RefSeqⁱ	NP_001073645.1, NM_001080176.1
UniGeneⁱ	Dr.79802

Genome annotation databases

Ensemblⁱ	ENSDART00000101051; ENSDARP00000091825; ENSDARG00000069428
GeneIDⁱ	558918
KEGGⁱ	dre:558918

Similar proteinsⁱ

50% Identity

Protein	Similar proteins		Species	Score	Length	Source
A1L2F4	oocyte-specific histone RNA stem-loop-binding protein 2-like isoform X2		ICTPU		256	UniRef50_A1L2F4
oocyte-specific histone RNA stem-loop-binding protein 2-like		SALSA		328
Uncharacterized protein		ONCMY		332
Stem loop binding protein 2		CARGB		324
oocyte-specific histone RNA stem-loop-binding protein 2-like isoform X1		Asian bonytongue		335
+23

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CT027639 Genomic DNA No translation available. CU462984 Genomic DNA No translation available. BC129495 mRNA Translation: AAI29496.1
RefSeqⁱ	NP_001073645.1, NM_001080176.1
UniGeneⁱ	Dr.79802

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	7955.ENSDARP00000091825

STRINGⁱ

7955.ENSDARP00000091825

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSDART00000101051; ENSDARP00000091825; ENSDARG00000069428
GeneIDⁱ	558918
KEGGⁱ	dre:558918

Organism-specific databases

CTDⁱ	558918
ZFINⁱ	ZDB-GENE-070112-1722 slbp2

Phylogenomic databases

eggNOGⁱ	KOG3934 Eukaryota ENOG41122ZE LUCA
GeneTreeⁱ	ENSGT00390000008738
KOⁱ	K18710
OMAⁱ	SILERCI
OrthoDBⁱ	EOG091G0LT8
TreeFamⁱ	TF316521

Gene expression databases

Bgeeⁱ	ENSDARG00000069428 Expressed in 20 organ(s), highest expression level in blastula

Bgeeⁱ

ENSDARG00000069428 Expressed in 20 organ(s), highest expression level in blastula

Family and domain databases

Gene3Dⁱ	1.10.8.1120, 1 hit
InterProⁱ	View protein in InterPro IPR026502 SLBP1/SLBP2 IPR029344 SLBP_RNA_bind IPR038294 SLBP_RNA_bind_sf
PANTHERⁱ	PTHR17408 PTHR17408, 1 hit
Pfamⁱ	View protein in Pfam PF15247 SLBP_RNA_bind, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	A1L2F4_DANRE
Accessionⁱ	A1L2F4Primary (citable) accession number: A1L2F4
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	February 6, 2007
	Last sequence update:	February 6, 2007
	Last modified:	September 12, 2018
	This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteomeImported

UniProtKB - A1L2F4 (A1L2F4_DANRE)

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Stem-loop-binding protein 2

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Functionⁱ

GO - Molecular functionⁱ

Names & Taxonomyⁱ

Organism-specific databases

Expressionⁱ

Gene expression databases

Interactionⁱ

Protein-protein interaction databases

Family & Domainsⁱ

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequenceⁱ

Sequence databases

Genome annotation databases

Similar proteinsⁱ

Cross-referencesⁱ

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

UniProt is an ELIXIR core data resource

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UniParc

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UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - A1L2F4 (A1L2F4_DANRE)

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Stem-loop-binding protein 2

slbp2

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

UniProt is an ELIXIR core data resource

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Functionⁱ

GO - Molecular functionⁱ

Names & Taxonomyⁱ

Expressionⁱ

Interactionⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ