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UniProtKB - A1L2F4 (A1L2F4_DANRE)
Protein
Submitted name:
Stem-loop-binding protein 2
Gene
slbp2
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- histone pre-mRNA stem-loop binding Source: ZFIN
- mRNA binding Source: GO_Central
GO - Biological processi
- embryonic cleavage Source: ZFIN
- mRNA 3'-end processing by stem-loop binding and cleavage Source: GO_Central
- mRNA transport Source: GO_Central
- oogenesis Source: ZFIN
Keywordsi
Molecular function | RNA-bindingARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Stem-loop-binding protein 2ImportedSubmitted name: Zgc:158856Imported |
Gene namesi | Name:slbp2Imported ORF Names:zgc:158856Imported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-070112-1722, slbp2 |
Subcellular locationi
Nucleus
- histone pre-mRNA 3'end processing complex Source: GO_Central
Other locations
- cytoplasm Source: GO_Central
Expressioni
Gene expression databases
Bgeei | ENSDARG00000069428, Expressed in blastula and 26 other tissues |
Structurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 132 – 198 | SLBP_RNA_bindInterPro annotationAdd BLAST | 67 |
Sequence similaritiesi
Belongs to the SLBP family.ARBA annotation
Phylogenomic databases
eggNOGi | KOG3934, Eukaryota |
GeneTreei | ENSGT00940000164705 |
HOGENOMi | CLU_918155_0_0_1 |
OMAi | DQLFWNP |
OrthoDBi | 1284291at2759 |
TreeFami | TF316521 |
Family and domain databases
Gene3Di | 1.10.8.1120, 1 hit |
InterProi | View protein in InterPro IPR026502, SLBP1/SLBP2 IPR029344, SLBP_RNA_bind IPR038294, SLBP_RNA_bind_sf |
PANTHERi | PTHR17408, PTHR17408, 1 hit |
Pfami | View protein in Pfam PF15247, SLBP_RNA_bind, 1 hit |
i Sequence
Sequence statusi: Complete.
A1L2F4-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MTTRIESLLQ SPFESRLGLP LHLWPTDVAQ DFSSKTLSLP CSPEPWLLPG
60 70 80 90 100
CSSVYDSLVS CSKTPLSASQ NGEKPSAVQK PRRSSILERC ILRMSTASVA
110 120 130 140 150
VGTEDLDGVK RSPSRGKWYP HNADPSHFEI NEAVLKRRQK QIQYGKNTCG
160 170 180 190 200
YQNYVQQVPK RLRVPGIHPS TPNKYRKYSR RSWDMQVRLW RRALHAWDLP
210 220 230 240 250
SASQNDTEGQ DPVDQLQSLL EKMNTELSDG GEKEDMKWEM APDSMTSIIS
260 270 280 290 300
QPSEISTDGP WLASNALQIG ASSHLNQSSQ HGLGYTFSNQ QTAQENVLGW
310 320
LRFLLETDHN QTQAPLLPEE PFWRIA
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CT027639 Genomic DNA No translation available. CU462984 Genomic DNA No translation available. BC129495 mRNA Translation: AAI29496.1 |
RefSeqi | NP_001073645.1, NM_001080176.1 |
Genome annotation databases
Ensembli | ENSDART00000101051; ENSDARP00000091825; ENSDARG00000069428 |
GeneIDi | 558918 |
KEGGi | dre:558918 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CT027639 Genomic DNA No translation available. CU462984 Genomic DNA No translation available. BC129495 mRNA Translation: AAI29496.1 |
RefSeqi | NP_001073645.1, NM_001080176.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 7955.ENSDARP00000091825 |
Genome annotation databases
Ensembli | ENSDART00000101051; ENSDARP00000091825; ENSDARG00000069428 |
GeneIDi | 558918 |
KEGGi | dre:558918 |
Organism-specific databases
CTDi | 558918 |
ZFINi | ZDB-GENE-070112-1722, slbp2 |
Phylogenomic databases
eggNOGi | KOG3934, Eukaryota |
GeneTreei | ENSGT00940000164705 |
HOGENOMi | CLU_918155_0_0_1 |
OMAi | DQLFWNP |
OrthoDBi | 1284291at2759 |
TreeFami | TF316521 |
Gene expression databases
Bgeei | ENSDARG00000069428, Expressed in blastula and 26 other tissues |
Family and domain databases
Gene3Di | 1.10.8.1120, 1 hit |
InterProi | View protein in InterPro IPR026502, SLBP1/SLBP2 IPR029344, SLBP_RNA_bind IPR038294, SLBP_RNA_bind_sf |
PANTHERi | PTHR17408, PTHR17408, 1 hit |
Pfami | View protein in Pfam PF15247, SLBP_RNA_bind, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | A1L2F4_DANRE | |
Accessioni | A1L2F4Primary (citable) accession number: A1L2F4 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 6, 2007 |
Last sequence update: | February 6, 2007 | |
Last modified: | April 7, 2021 | |
This is version 79 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |