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Entry version 71 (29 Sep 2021)
Sequence version 1 (29 May 2007)
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Protein
Submitted name:

SprD

Gene

sprD

Organism
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101) (Cytophaga johnsonae)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
FJOH376686:G1G8T-1030-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
SprDImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:sprDImported
Ordered Locus Names:Fjoh_0980Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFlavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101) (Cytophaga johnsonae)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri376686 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeFlavobacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006694 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 20Sequence analysisAdd BLAST20
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501140610421 – 1588Sequence analysisAdd BLAST1568

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
376686.Fjoh_0980

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni510 – 532DisorderedSequence analysisAdd BLAST23
Regioni1258 – 1279DisorderedSequence analysisAdd BLAST22

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili341 – 387Sequence analysisAdd BLAST47
Coiled coili474 – 494Sequence analysisAdd BLAST21
Coiled coili532 – 552Sequence analysisAdd BLAST21
Coiled coili568 – 588Sequence analysisAdd BLAST21
Coiled coili608 – 628Sequence analysisAdd BLAST21
Coiled coili692 – 731Sequence analysisAdd BLAST40
Coiled coili736 – 781Sequence analysisAdd BLAST46
Coiled coili793 – 820Sequence analysisAdd BLAST28
Coiled coili844 – 871Sequence analysisAdd BLAST28
Coiled coili902 – 922Sequence analysisAdd BLAST21
Coiled coili963 – 1001Sequence analysisAdd BLAST39
Coiled coili1006 – 1026Sequence analysisAdd BLAST21
Coiled coili1057 – 1077Sequence analysisAdd BLAST21
Coiled coili1108 – 1128Sequence analysisAdd BLAST21
Coiled coili1159 – 1179Sequence analysisAdd BLAST21
Coiled coili1208 – 1228Sequence analysisAdd BLAST21
Coiled coili1325 – 1352Sequence analysisAdd BLAST28
Coiled coili1363 – 1383Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG1196, Bacteria
COG3064, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_262616_0_0_10

Identification of Orthologs from Complete Genome Data

More...
OMAi
RAYNYFF

Database of Orthologous Groups

More...
OrthoDBi
264721at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR019861, PorP/SprF_Bacteroidetes

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11751, PorP_SprF, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03519, T9SS_PorP_fam, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A1E5U4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKILLFITL FCGFSCLLYS QEKNENGVVS FSMPIRNSLK FNRYLINPTF
60 70 80 90 100
SFVRESNPYA SFYNKRQWVQ FENAPQTYLA NYSGRFRENE AFAVGLFQQN
110 120 130 140 150
YGLMTVFGGV VNFAHNIVLQ EDSNLTFGLN VGAYQSGLNK GKIVTDDMDI
160 170 180 190 200
LNGDYPSNML LTVNPGINYG TTFLDFGLSV NNLILYNFGS GMVKEDPERA
210 220 230 240 250
IQLHAMYTGY IDTYGFFDRS KFSGIIRTEL KKDKTVISGL AMLALKQGVW
260 270 280 290 300
AQAGYNTLYG VSAGLGINLS PSIAIEYNYE RGMGNFTNMG GSHEFAIAYR
310 320 330 340 350
FKNRNYYYGD DDEGSIIDPS RPKPVPAKPK SAATQVNRAD IAEKNKLAAE
360 370 380 390 400
AKAKADAEAK QVRLAAAEKA KADAEAAAKA KLEADNKAKA DAEALKIKLA
410 420 430 440 450
ADAKAKADAA AAARANVVAE QKAQAQLAAD KAKADAETRR LKLAADNKAK
460 470 480 490 500
ADAAAAAKAK AATTTPAAAT QKTQAQLAAD KAKADAEARR LKLEADAKAK
510 520 530 540 550
ADAEAEAKAK AAVTTPAAPQ QTPAQLAADK AKADAEARRI KLEAEAKAKA
560 570 580 590 600
DADAAKVKAV TTTSVQQRTQ AQLAAEKAKA DAEAATKARL ATAEKTRADA
610 620 630 640 650
EAARQARLAA AEKAKADAEA ARAKLVADAK AKADAAEAKR KADAKAKAEA
660 670 680 690 700
ADMESILAAD AKAKADSDAL QARLAADAKA KTAAEAKTKA SIDAANRAKL
710 720 730 740 750
AADAKAKAAE EAALKEKLAA EAKAKADAEA RQAIIAAEAK AKADAEALKI
760 770 780 790 800
KQAEEAKAKA AAEAQAKLDA EAKAKADAEA LQAKLAADAK AKADAEALKI
810 820 830 840 850
KQAAEAKVKA EEEARQAKLA AEAKAKADAE ALQAKLAADA KAKADAEALQ
860 870 880 890 900
AKQATEAKVK AEEEARQAKL AAEAKAKADA EALQAKLAAD AKAKADAEAL
910 920 930 940 950
QAKQAAEAKV KADEEARQAK LAADAKAKAD AEALQAKLAA DAKAKADMEA
960 970 980 990 1000
AQAKLLADAR VKADAEATAK AKAEAEAKKL REEEEARQAK LEADAKAKAD
1010 1020 1030 1040 1050
AEALQAKQAA EAKAKADEEA RQAKLAADAK AKADAEALQA KLAADAKAKA
1060 1070 1080 1090 1100
DAEALQARQA AEAKAKADEE ARQAKLAADA KAKADAEALQ AKLAADAKAK
1110 1120 1130 1140 1150
ADAEALQARQ AAEAKAKADE EARQAKLAAD AKAKADAEAL QAKLAADAKA
1160 1170 1180 1190 1200
KADAEALQAK QAAEAKAKAD EEARQAKLAA DAKAKADAEA LQAKLAADAK
1210 1220 1230 1240 1250
AKADAEALQA KQAAEAKAKA DAEALQAKLA ADAKAKADME AAQAKLLADA
1260 1270 1280 1290 1300
KAKADAEATE RLRAEEETRQ LKEEEERQAR LAAEKAKADA EAAARAAAAK
1310 1320 1330 1340 1350
DETAKAIENL TQSIEGTSKT QNDLLDQFKA TVANKQKDLN DLKEENDLSE
1360 1370 1380 1390 1400
KGIYREPKPF KSVAAENSQL EALKAQLADA SRIQKDEIAK LTNLYNERLK
1410 1420 1430 1440 1450
KVPNKNDALN KAYLEKINQL KAAQLKMEME GAALLADLER IKTETEIEKK
1460 1470 1480 1490 1500
RRIKRAAYEN DEGRYAQDVA ALKRIKETTK VSSTPLTASD FDFGEDQSNM
1510 1520 1530 1540 1550
QIIKNIKNSE SGFYMILAVH NSVEKRDQFL TKAVAAGLTD INFFYNVTTS
1560 1570 1580
KYYIYYEKFD GLQEATKALE AKGSKPYNGK MAIVKVEN
Length:1,588
Mass (Da):168,328
Last modified:May 29, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBC91243CAB3A58FD
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
EF111026 Genomic DNA Translation: ABL60885.1
CP000685 Genomic DNA Translation: ABQ04013.1

NCBI Reference Sequences

More...
RefSeqi
WP_012023066.1, NZ_MUGZ01000034.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABQ04013; ABQ04013; Fjoh_0980

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
fjo:Fjoh_0980

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF111026 Genomic DNA Translation: ABL60885.1
CP000685 Genomic DNA Translation: ABQ04013.1
RefSeqiWP_012023066.1, NZ_MUGZ01000034.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi376686.Fjoh_0980

Genome annotation databases

EnsemblBacteriaiABQ04013; ABQ04013; Fjoh_0980
KEGGifjo:Fjoh_0980

Phylogenomic databases

eggNOGiCOG1196, Bacteria
COG3064, Bacteria
HOGENOMiCLU_262616_0_0_10
OMAiRAYNYFF
OrthoDBi264721at2

Enzyme and pathway databases

BioCyciFJOH376686:G1G8T-1030-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR019861, PorP/SprF_Bacteroidetes
PfamiView protein in Pfam
PF11751, PorP_SprF, 1 hit
TIGRFAMsiTIGR03519, T9SS_PorP_fam, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA1E5U4_FLAJ1
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A1E5U4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: September 29, 2021
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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