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UniProtKB - A1AM04 (RL25_PELPD)
Protein
50S ribosomal protein L25
Gene
rplY
Organism
Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1)
Status
Functioni
This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.
UniRule annotationGO - Molecular functioni
- 5S rRNA binding Source: InterPro
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: 50S ribosomal protein L25UniRule annotationAlternative name(s): General stress protein CTCUniRule annotation |
Gene namesi | Name:rplYUniRule annotation Synonyms:ctcUniRule annotation Ordered Locus Names:Ppro_0744 |
Organismi | Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) |
Taxonomic identifieri | 338966 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Desulfuromonadaceae › Pelobacter › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_1000052914 | 1 – 199 | 50S ribosomal protein L25Add BLAST | 199 |
Interactioni
Subunit structurei
Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.
UniRule annotationProtein-protein interaction databases
STRINGi | 338966.Ppro_0744 |
Family & Domainsi
Sequence similaritiesi
Phylogenomic databases
eggNOGi | COG1825, Bacteria |
HOGENOMi | CLU_075939_2_1_7 |
OMAi | HVDFYEV |
OrthoDBi | 1673077at2 |
Family and domain databases
CDDi | cd00495, Ribosomal_L25_TL5_CTC, 1 hit |
Gene3Di | 2.170.120.20, 1 hit 2.40.240.10, 1 hit |
HAMAPi | MF_01334, Ribosomal_L25_CTC, 1 hit |
InterProi | View protein in InterPro IPR020056, Rbsml_L25/Gln-tRNA_synth_N IPR029751, Ribosomal_L25 IPR011035, Ribosomal_L25/Gln-tRNA_synth IPR020057, Ribosomal_L25_b-dom IPR037121, Ribosomal_L25_C IPR001021, Ribosomal_L25_long |
Pfami | View protein in Pfam PF01386, Ribosomal_L25p, 1 hit PF14693, Ribosomal_TL5_C, 1 hit |
SUPFAMi | SSF50715, SSF50715, 1 hit |
TIGRFAMsi | TIGR00731, bL25_bact_ctc, 1 hit |
i Sequence
Sequence statusi: Complete.
A1AM04-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MQQKQMNIEL RSKTGKGISR KLRSADMVPG VVYGKGMDPM AVSINYRELQ
60 70 80 90 100
AAMAGEGGQN NLITLVGGGS LDQSMAIVAD LQRDAVKGTY KHVDLHRVNM
110 120 130 140 150
SEKLRVTVPV VLKGTAIGVK EGGLLDFAHH ELHVECLPGN IPDHIEIDVT
160 170 180 190
SLAVAHSIHV GEIALPEGVK VLDNPKTPVV SVLGRVKEEA EAAAEAAEA
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CP000482 Genomic DNA Translation: ABK98374.1 |
RefSeqi | WP_011734686.1, NC_008609.1 |
Genome annotation databases
EnsemblBacteriai | ABK98374; ABK98374; Ppro_0744 |
KEGGi | ppd:Ppro_0744 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CP000482 Genomic DNA Translation: ABK98374.1 |
RefSeqi | WP_011734686.1, NC_008609.1 |
3D structure databases
SMRi | A1AM04 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 338966.Ppro_0744 |
Genome annotation databases
EnsemblBacteriai | ABK98374; ABK98374; Ppro_0744 |
KEGGi | ppd:Ppro_0744 |
Phylogenomic databases
eggNOGi | COG1825, Bacteria |
HOGENOMi | CLU_075939_2_1_7 |
OMAi | HVDFYEV |
OrthoDBi | 1673077at2 |
Family and domain databases
CDDi | cd00495, Ribosomal_L25_TL5_CTC, 1 hit |
Gene3Di | 2.170.120.20, 1 hit 2.40.240.10, 1 hit |
HAMAPi | MF_01334, Ribosomal_L25_CTC, 1 hit |
InterProi | View protein in InterPro IPR020056, Rbsml_L25/Gln-tRNA_synth_N IPR029751, Ribosomal_L25 IPR011035, Ribosomal_L25/Gln-tRNA_synth IPR020057, Ribosomal_L25_b-dom IPR037121, Ribosomal_L25_C IPR001021, Ribosomal_L25_long |
Pfami | View protein in Pfam PF01386, Ribosomal_L25p, 1 hit PF14693, Ribosomal_TL5_C, 1 hit |
SUPFAMi | SSF50715, SSF50715, 1 hit |
TIGRFAMsi | TIGR00731, bL25_bact_ctc, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RL25_PELPD | |
Accessioni | A1AM04Primary (citable) accession number: A1AM04 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | January 15, 2008 |
Last sequence update: | January 23, 2007 | |
Last modified: | September 29, 2021 | |
This is version 78 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Ribosomal proteins
Ribosomal proteins families and list of entries - SIMILARITY comments
Index of protein domains and families