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Entry version 90 (26 Feb 2020)
Sequence version 1 (09 Jan 2007)
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Protein
Submitted name:

Probable arabinosyltransferase A

Gene

MSMEG_6389

Organism
Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosyltransferaseImported, Transferase

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GT53 Glycosyltransferase Family 53

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Probable arabinosyltransferase AImported (EC:2.4.2.-Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:MSMEG_6389Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri246196 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycolicibacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000757 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei28 – 47HelicalSequence analysisAdd BLAST20
Transmembranei223 – 241HelicalSequence analysisAdd BLAST19
Transmembranei262 – 279HelicalSequence analysisAdd BLAST18
Transmembranei334 – 351HelicalSequence analysisAdd BLAST18
Transmembranei363 – 382HelicalSequence analysisAdd BLAST20
Transmembranei417 – 443HelicalSequence analysisAdd BLAST27
Transmembranei464 – 481HelicalSequence analysisAdd BLAST18
Transmembranei523 – 544HelicalSequence analysisAdd BLAST22
Transmembranei556 – 573HelicalSequence analysisAdd BLAST18
Transmembranei579 – 600HelicalSequence analysisAdd BLAST22
Transmembranei612 – 634HelicalSequence analysisAdd BLAST23
Transmembranei654 – 674HelicalSequence analysisAdd BLAST21
Transmembranei686 – 708HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
A0R614

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
246196.MSMEI_6221

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini50 – 213Arabino_trans_NInterPro annotationAdd BLAST164
Domaini218 – 674Arabinose_transInterPro annotationAdd BLAST457
Domaini703 – 1079Arabino_trans_CInterPro annotationAdd BLAST377

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105J1Z Bacteria
ENOG410XSQE LUCA

KEGG Orthology (KO)

More...
KOi
K11386

Identification of Orthologs from Complete Genome Data

More...
OMAi
TPDYNAK

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.610, 1 hit
2.60.120.940, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR032731 Arabino_trans_C
IPR042486 Arabino_trans_C_2
IPR007680 Arabino_trans_central
IPR040920 Arabino_trans_N
IPR027451 EmbABC_dom1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14896 Arabino_trans_C, 1 hit
PF17689 Arabino_trans_N, 1 hit
PF04602 Arabinose_trans, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0R614-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGNMDEAVS GNMDEAVSAG KDVRIARWVA TIAGLLGFVL SVSIPLLPVT
60 70 80 90 100
QTTATLNWPQ QGRLDNVTAP LISQAPLELT ATVPCSVVRD LPPEGGLVFG
110 120 130 140 150
TAPAEGRDAA LNAMLVNVTE TRVDVIVRNV VVASVNRDRV AGPDCQRIEI
160 170 180 190 200
TSNLDGTYAD FVGLTQISGE DAGKLQRTGY PDPNLRPAIV GVFTDLTGPA
210 220 230 240 250
PQGLSVSAEI DTRFTTHPTA LKLAAMLLAI VSTVIALLAL WRLDRLDGRR
260 270 280 290 300
MHRLIPTRWR TVTAVDGVVV GGMAIWYVIG ANSSDDGYIL QMARTAEHAG
310 320 330 340 350
YMANYFRWFG SPEDPFGWYY NVLALMTKVS DASIWIRLPD LICALICWLL
360 370 380 390 400
LSREVLPRLG PAVAGSRAAM WAAGLVLLGA WMPFNNGLRP EGQIATGALI
410 420 430 440 450
TYVLIERAVT SGRLTPAALA ITTAAFTLGI QPTGLIAVAA LLAGGRPILR
460 470 480 490 500
IVMRRRRLVG TWPLIAPLLA AGTVILAVVF ADQTIATVLE ATRIRTAIGP
510 520 530 540 550
SQEWWTENLR YYYLILPTTD GAISRRVAFV FTAMCLFPSL FMMLRRKHIA
560 570 580 590 600
GVARGPAWRL MGIIFATMFF LMFTPTKWIH HFGLFAAVGG AMAALATVLV
610 620 630 640 650
SPTVLRSARN RMAFLSLVLF VLAFCFASTN GWWYVSNFGA PFNNSVPKVG
660 670 680 690 700
GVQISAIFFA LSAIAALWAF WLHLTRRTES RVVDRLTAAP IPVAAGFMVV
710 720 730 740 750
VMMASMAIGV VRQYPTYSNG WANIRAFAGG CGLADDVLVE PDSNAGFLTP
760 770 780 790 800
LPGAYGPLGP LGGEDPQGFS PDGVPDRIIA EAIRLNNPQP GTDYDWNRPI
810 820 830 840 850
KLDEPGINGS TVPLPYGLDP KRVPVAGTYS TEAQQESRLS SAWYELPARD
860 870 880 890 900
ETERAAHPLV VITAAGTITG ESVANGLTTG QTVDLEYATR GPDGTLVPAG
910 920 930 940 950
RVTPYDVGPT PSWRNLRYPR SEIPDDAVAV RVVAEDLSLS QGDWIAVTPP
960 970 980 990 1000
RVPELQSVQE YVGSDQPVLM DWAVGLAFPC QQPMLHANGV TEVPKFRISP
1010 1020 1030 1040 1050
DYYAKLQSTD TWQDGINGGL LGITDLLLRA SVMSTYLSQD WGQDWGSLRK
1060 1070 1080
FDTVVEATPA ELDFGSQTHS GLYSPGPLRI RP
Length:1,082
Mass (Da):116,777
Last modified:January 9, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC16DE217F7834D47
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP000480 Genomic DNA Translation: ABK72840.1

NCBI Reference Sequences

More...
RefSeqi
WP_011731255.1, NZ_SIJM01000013.1
YP_890602.1, NC_008596.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABK72840; ABK72840; MSMEG_6389
AFP42647; AFP42647; MSMEI_6221

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4534666

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
msm:MSMEG_6389

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|246196.19.peg.6216

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA Translation: ABK72840.1
RefSeqiWP_011731255.1, NZ_SIJM01000013.1
YP_890602.1, NC_008596.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi246196.MSMEI_6221

Protein family/group databases

CAZyiGT53 Glycosyltransferase Family 53

Proteomic databases

PRIDEiA0R614

Genome annotation databases

EnsemblBacteriaiABK72840; ABK72840; MSMEG_6389
AFP42647; AFP42647; MSMEI_6221
GeneIDi4534666
KEGGimsm:MSMEG_6389
PATRICifig|246196.19.peg.6216

Phylogenomic databases

eggNOGiENOG4105J1Z Bacteria
ENOG410XSQE LUCA
KOiK11386
OMAiTPDYNAK

Family and domain databases

Gene3Di2.60.120.610, 1 hit
2.60.120.940, 1 hit
InterProiView protein in InterPro
IPR032731 Arabino_trans_C
IPR042486 Arabino_trans_C_2
IPR007680 Arabino_trans_central
IPR040920 Arabino_trans_N
IPR027451 EmbABC_dom1
PfamiView protein in Pfam
PF14896 Arabino_trans_C, 1 hit
PF17689 Arabino_trans_N, 1 hit
PF04602 Arabinose_trans, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0R614_MYCS2
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0R614
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: February 26, 2020
This is version 90 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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