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Entry version 82 (26 Feb 2020)
Sequence version 1 (09 Jan 2007)
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Protein
Submitted name:

Probable arabinosyltransferase B

Gene

MSMEG_6388

Organism
Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosyltransferaseImported, Transferase

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
GCF_000015005:MSMEG_6388-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GT53 Glycosyltransferase Family 53

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Probable arabinosyltransferase BImported (EC:2.4.2.-Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:MSMEG_6388Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri246196 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycolicibacterium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000757 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei7 – 29HelicalSequence analysisAdd BLAST23
Transmembranei199 – 219HelicalSequence analysisAdd BLAST21
Transmembranei234 – 255HelicalSequence analysisAdd BLAST22
Transmembranei310 – 332HelicalSequence analysisAdd BLAST23
Transmembranei344 – 360HelicalSequence analysisAdd BLAST17
Transmembranei390 – 421HelicalSequence analysisAdd BLAST32
Transmembranei433 – 456HelicalSequence analysisAdd BLAST24
Transmembranei504 – 521HelicalSequence analysisAdd BLAST18
Transmembranei533 – 550HelicalSequence analysisAdd BLAST18
Transmembranei556 – 576HelicalSequence analysisAdd BLAST21
Transmembranei588 – 606HelicalSequence analysisAdd BLAST19
Transmembranei626 – 649HelicalSequence analysisAdd BLAST24
Transmembranei669 – 691HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
A0R613

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
246196.MSMEI_6220

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini33 – 189Arabino_trans_NInterPro annotationAdd BLAST157
Domaini193 – 652Arabinose_transInterPro annotationAdd BLAST460
Domaini689 – 1077Arabino_trans_CInterPro annotationAdd BLAST389

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4108NUW Bacteria
ENOG410Z8I9 LUCA

KEGG Orthology (KO)

More...
KOi
K11385

Identification of Orthologs from Complete Genome Data

More...
OMAi
GWLHFRM

Database of Orthologous Groups

More...
OrthoDBi
53417at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.610, 1 hit
2.60.120.940, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR032731 Arabino_trans_C
IPR042486 Arabino_trans_C_2
IPR007680 Arabino_trans_central
IPR040920 Arabino_trans_N
IPR027451 EmbABC_dom1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14896 Arabino_trans_C, 1 hit
PF17689 Arabino_trans_N, 1 hit
PF04602 Arabinose_trans, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0R613-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTEPSRIARL IAVVAGIAGV LLCGLVPLLP VEETTATVLW PQGVGADGNV
60 70 80 90 100
TELTAPLVAG APRALDVTIP CRAVAELPAD GGVVFSTNPA GGIEAGRNGM
110 120 130 140 150
FIRANADVVY VAFRDTVAAV APREAVDSGA CSEIHVWADV SAVGADFAGI
160 170 180 190 200
PDASGTLPVD KRPQVSGVFT DLKVPAQPGL AARIDIDTRF ITSPTLLKTA
210 220 230 240 250
VMVLGLACVI GSIVALALLD RGWRRRPPRT RGRAGLWTWI TDTGVIGGLL
260 270 280 290 300
IWHIVGAPTS DDGYNMTIAR VASEAGYTTN YYRYFGASEA PFDWYQSVLS
310 320 330 340 350
HLASISTAGV WMRLPATAAA IATWLIISRC VLPRIGRRVA ANRVAMLTAG
360 370 380 390 400
ATFLAAWLPF NNGLRPEPLI AFAVITVWML VENSIGTRRL WPAAVAIVIA
410 420 430 440 450
MFSVTLAPQG LIALAPLLVG ARAIGRVVTA RRAGTGILAS LAPLAASVAV
460 470 480 490 500
VFVIIFRDQT LATVAESVRI KYVVGPTIPW YQEFLRYYFL TVEDSVDGSL
510 520 530 540 550
TRRFAVLVLL LCLFGLIMVL LRRGRVPGAV SGPLWRLCGS TAIGLLLLIL
560 570 580 590 600
TPTKWAIQFG AFAGLAGALG GVTAFAFARV GLHSRRNLAL YVTALLFILA
610 620 630 640 650
WATSGLNGWF YVGNYGVPWF DKQPVIAHYP VTTIFLVLAI VGGLLAGWLH
660 670 680 690 700
FRMDYAGHTE VADTGRNRAL ASTPLLIVAT IMVVLELGSM VKATVGRYPV
710 720 730 740 750
YTVGSANIAA LRSAGDSCAM ADAVLVEADP NEGMLQPVPG QRFGEYGPLG
760 770 780 790 800
GEDPVGFTPN GVSDTLEPAE PVAANPGTPN SDGPVDKPNI GIGYAAGTGG
810 820 830 840 850
GYGPEGVNGS RVFLPFGLDP SRTPVMGSYG ENKLAAKATS AWYQLPPRTP
860 870 880 890 900
DRPLVTVAAA GAIWYYEEDG SFNYGQSLKL QWGVHRPDGT YQALSEVQPI
910 920 930 940 950
DIFQQKAWRN LRFPLAWAPP EANVARIVAD DPNLSEDQWF AFTPPRVPVL
960 970 980 990 1000
QTAQQFLGSQ TPVLMDIATA ANFPCQRPFA ERLGVAELPE YRIIPNFKQM
1010 1020 1030 1040 1050
VVSSNQWQSA ADGGPFLFIQ ALLRTEAIPT YLRDDWYRDW GSIERYIRVV
1060 1070 1080
PQEQAPTAAI EEGSTRVFGW SRGGPIRALP
Length:1,080
Mass (Da):115,473
Last modified:January 9, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i96873BF38D8E8952
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP000480 Genomic DNA Translation: ABK71134.1

NCBI Reference Sequences

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RefSeqi
WP_011731254.1, NZ_SIJM01000013.1
YP_890601.1, NC_008596.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABK71134; ABK71134; MSMEG_6388

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4532614

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
msb:LJ00_31575
msm:MSMEG_6388

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|246196.19.peg.6215

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA Translation: ABK71134.1
RefSeqiWP_011731254.1, NZ_SIJM01000013.1
YP_890601.1, NC_008596.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi246196.MSMEI_6220

Protein family/group databases

CAZyiGT53 Glycosyltransferase Family 53

Proteomic databases

PRIDEiA0R613

Genome annotation databases

EnsemblBacteriaiABK71134; ABK71134; MSMEG_6388
GeneIDi4532614
KEGGimsb:LJ00_31575
msm:MSMEG_6388
PATRICifig|246196.19.peg.6215

Phylogenomic databases

eggNOGiENOG4108NUW Bacteria
ENOG410Z8I9 LUCA
KOiK11385
OMAiGWLHFRM
OrthoDBi53417at2

Enzyme and pathway databases

BioCyciGCF_000015005:MSMEG_6388-MONOMER

Family and domain databases

Gene3Di2.60.120.610, 1 hit
2.60.120.940, 1 hit
InterProiView protein in InterPro
IPR032731 Arabino_trans_C
IPR042486 Arabino_trans_C_2
IPR007680 Arabino_trans_central
IPR040920 Arabino_trans_N
IPR027451 EmbABC_dom1
PfamiView protein in Pfam
PF14896 Arabino_trans_C, 1 hit
PF17689 Arabino_trans_N, 1 hit
PF04602 Arabinose_trans, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0R613_MYCS2
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0R613
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: February 26, 2020
This is version 82 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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