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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:MSMEG_1438, MSMEI_1402
OrganismiMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Taxonomic identifieri246196 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycolicibacterium
Proteomesi
  • UP000006158 Componenti: Chromosome
  • UP000000757 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_10000681132 – 10050S ribosomal protein L23Add BLAST99

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

IntActiA0QSD3, 1 interactor
STRINGi246196.MSMEG_1438

Structurei

Secondary structure

1100
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliA0QSD3
SMRiA0QSD3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL23 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105KZR Bacteria
COG0089 LUCA
HOGENOMiHOG000231366
KOiK02892
OMAiTMNPPRR
OrthoDBiPOG091H00TK

Family and domain databases

Gene3Di3.30.70.330, 1 hit
HAMAPiMF_01369_B Ribosomal_L23_B, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR001014 Ribosomal_L23/L25_CS
IPR013025 Ribosomal_L25/23
PfamiView protein in Pfam
PF00276 Ribosomal_L23, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
PROSITEiView protein in PROSITE
PS00050 RIBOSOMAL_L23, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A0QSD3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATITDPRDI ILAPVISEKS YGLIEDNVYT FVVHPDSNKT QIKIAIEKIF
60 70 80 90 100
DVKVDSVNTA NRQGKRKRTR TGFGKRKSTK RAIVKLAAGS KPIDLFGAPA
Length:100
Mass (Da):11,028
Last modified:January 9, 2007 - v1
Checksum:i7DBEF0FD4D647C20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA Translation: ABK70487.1
CP001663 Genomic DNA Translation: AFP37875.1
RefSeqiWP_003892825.1, NZ_CP009494.1
YP_885821.1, NC_008596.1

Genome annotation databases

EnsemblBacteriaiABK70487; ABK70487; MSMEG_1438
AFP37875; AFP37875; MSMEI_1402
GeneIDi4533062
KEGGimsb:LJ00_07175
msg:MSMEI_1402
msm:MSMEG_1438
PATRICifig|246196.19.peg.1424

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000480 Genomic DNA Translation: ABK70487.1
CP001663 Genomic DNA Translation: AFP37875.1
RefSeqiWP_003892825.1, NZ_CP009494.1
YP_885821.1, NC_008596.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5O60electron microscopy3.20U1-100[»]
5O61electron microscopy3.31U1-100[»]
5XYMelectron microscopy3.08T1-100[»]
ProteinModelPortaliA0QSD3
SMRiA0QSD3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA0QSD3, 1 interactor
STRINGi246196.MSMEG_1438

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABK70487; ABK70487; MSMEG_1438
AFP37875; AFP37875; MSMEI_1402
GeneIDi4533062
KEGGimsb:LJ00_07175
msg:MSMEI_1402
msm:MSMEG_1438
PATRICifig|246196.19.peg.1424

Phylogenomic databases

eggNOGiENOG4105KZR Bacteria
COG0089 LUCA
HOGENOMiHOG000231366
KOiK02892
OMAiTMNPPRR
OrthoDBiPOG091H00TK

Family and domain databases

Gene3Di3.30.70.330, 1 hit
HAMAPiMF_01369_B Ribosomal_L23_B, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR001014 Ribosomal_L23/L25_CS
IPR013025 Ribosomal_L25/23
PfamiView protein in Pfam
PF00276 Ribosomal_L23, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
PROSITEiView protein in PROSITE
PS00050 RIBOSOMAL_L23, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_MYCS2
AccessioniPrimary (citable) accession number: A0QSD3
Secondary accession number(s): I7F8J1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: January 9, 2007
Last modified: October 10, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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