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UniProtKB - A0Q7H1 (A0Q7H1_FRATN)

Entry version 56 (02 Jun 2021)
Sequence version 1 (09 Jan 2007)
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Protein
Submitted name:

Putative pathogenicity deteminant protein pdpB1

Gene

pdpB

Organism
Francisella tularensis subsp. novicida (strain U112)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		FTUL401614:G1G75-1355-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative pathogenicity deteminant protein pdpB1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pdpBImported
Ordered Locus Names:FTN_1310Imported
ORF Names:AW25_694Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFrancisella tularensis subsp. novicida (strain U112)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri401614 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Thiotrichales › Francisellaceae › Francisella ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000762 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000031872 Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei6 – 29HelicalSequence analysisAdd BLAST24
Transmembranei274 – 292HelicalSequence analysisAdd BLAST19

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...OMAi		IYEQYAN

Database of Orthologous Groups

More...OrthoDBi		26470at2

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0Q7H1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNFIKNHQIL IISLTIAIIV LSVLGIFIIK KWLKTSRNPN KKSASKTIKN 
        60         70         80         90        100
AKSLIKKNKV KNNLSELYIF YGDYLAAKDY ITKIKPQAQI IDNNELPLIA 
       110        120        130        140        150
IDKNNTSLVF ANNEFSYLYK LKKKLNLQFY KLNFCFDISD DYYHENIKIS 
       160        170        180        190        200
EIYKELLKLR LKNFIISFYT LSEHTRSYNN AIDKKSIFKL TSDADTNHKA 
       210        220        230        240        250
EEEILSKILS SKDDVNNKYN NVRILNQIRR LLKNIYPQLK SINKEIFFNF 
       260        270        280        290        300
GLNIPDNIIA KKDTIFFSSS PKGIIINLIS LLFSFIFIIN IFQEINIKEK 
       310        320        330        340        350
LSIQELNQLH ESDSNKIIKE ARKKIDDAIL LDILYPKSIK YHFIYEQYAD 
       360        370        380        390        400
TLLKNVILPK YNDTYDLSMI TSFLIFFEYL DNKITNQHTN RILKIISSIT 
       410        420        430        440        450
NLSEKQLDIV IKYTTPSIRT EMIKSAINRA NKLYTNRLIV VGEDSESYLS 
       460        470        480        490        500
TKGFNAEYLG ISNTKRAKVI NNIYIQYLYK CATDNAILDL NDNYIIPTEV 
       510        520        530        540        550
NNIFKMYQEQ FDTSSKKLCN SSYINSITKS VSLILNQEEN KRKFKSFSDM 
       560        570        580        590        600
LDHIYYLVKS LEKNAKDVAD DGKEQTSSIT VSLINYVINS VVNPTYNKNE 
       610        620        630        640        650
LPLISPVSKN LYMEFAPNFY SKRILISPIY SKEYIKDNID PINKKFNRLV 
       660        670        680        690        700
NNLKNNFNIE PDFMIAIYKS SINNYIEKYI GSYNKMIDSL NNDSEFNKNI 
       710        720        730        740        750
SNKGALKLYL LAMSSKDSSF NSLIEFYSTN TDLITNESET NSSKKINKLQ 
       760        770        780        790        800
HFYGEITKLN KQNNTNDPND KSLWEPIDNY FKENDKYLES KSYADYKNIF 
       810        820        830        840        850
KQLNNLIIEQ GYSSTYKNIK QGYEPLQKVY SELSKINNHQ GNNNLYKLLK 
       860        870        880        890        900
KHLDIAINAI KTIAIQDAIT KLNNTVNIEY EYINNQFPFN KDSNSAATNE 
       910        920        930        940        950
AITKDFDNNG YIYSGFIEQL SPLLSYNKTD DRWESKDFSK PEEIDYLNKF 
       960        970        980        990       1000
NKVYLLNKLL WDDKRNPKAI KFDITPIPNK DNDYTFFSII LDKQNYVNSL 
      1010       1020       1030       1040       1050
NIKYSDSIEV LYNWNSLEST TITIKFEDGS NEQISYQGKW SILKAIKDAN 
      1060       1070       1080       1090 
CDQNNICTWV IKHKGKTYPV SFKIKSKFLQ VLGWQKQGEV NVQ
Length:1,093
Mass (Da):127,402
Last modified:January 9, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i25F4FA0D11E95B22
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP000439 Genomic DNA Translation: ABK90186.1
CP009633 Genomic DNA Translation: AJI61848.1

NCBI Reference Sequences

More...RefSeqi		WP_003040112.1, NZ_CP009633.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ABK90186; ABK90186; FTN_1310

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ftn:FTN_1310
ftx:AW25_694

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000439 Genomic DNA Translation: ABK90186.1
CP009633 Genomic DNA Translation: AJI61848.1
RefSeqiWP_003040112.1, NZ_CP009633.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiABK90186; ABK90186; FTN_1310
KEGGiftn:FTN_1310
ftx:AW25_694

Phylogenomic databases

OMAiIYEQYAN
OrthoDBi26470at2

Enzyme and pathway databases

BioCyciFTUL401614:G1G75-1355-MONOMER

Family and domain databases

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0Q7H1_FRATN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0Q7H1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 9, 2007
Last sequence update: January 9, 2007
Last modified: June 2, 2021
This is version 56 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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