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UniProtKB - A0PK05 (TMM72_HUMAN)

Entry version 86 (13 Feb 2019)
Sequence version 1 (09 Jan 2007)
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Protein

Transmembrane protein 72

Gene

TMEM72

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Transmembrane protein 72
Alternative name(s):
Kidney-specific secretory protein of 37 kDa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TMEM72
Synonyms:C10orf127, KSP37
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 10

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...EuPathDBi		HostDB:ENSG00000187783.11

Human Gene Nomenclature Database

More...HGNCi		HGNC:31658 TMEM72

neXtProt; the human protein knowledge platform

More...neXtProti		NX_A0PK05

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei16 – 36HelicalSequence analysisAdd BLAST21
Transmembranei41 – 61HelicalSequence analysisAdd BLAST21
Transmembranei86 – 105HelicalSequence analysisAdd BLAST20
Transmembranei109 – 131HelicalSequence analysisAdd BLAST23

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Open Targets

More...OpenTargetsi		ENSG00000187783

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA164726549

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		TMEM72

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003190551 – 275Transmembrane protein 72Add BLAST275

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		A0PK05

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		A0PK05

PRoteomics IDEntifications database

More...PRIDEi		A0PK05

ProteomicsDB human proteome resource

More...ProteomicsDBi		78
79 [A0PK05-2]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		A0PK05

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		A0PK05

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000187783 Expressed in 133 organ(s), highest expression level in adult mammalian kidney

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		A0PK05 HS

Organism-specific databases

Human Protein Atlas

More...HPAi		HPA039894
HPA062907

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...IntActi		A0PK05, 8 interactors

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000374234

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...ProteinModelPortali		A0PK05

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		A0PK05

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG410IGB3 Eukaryota
ENOG410XXDG LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00390000006888

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000139671

The HOVERGEN Database of Homologous Vertebrate Genes

More...HOVERGENi		HBG094935

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		A0PK05

Identification of Orthologs from Complete Genome Data

More...OMAi		APPEQYT

Database of Orthologous Groups

More...OrthoDBi		1128211at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		A0PK05

TreeFam database of animal gene trees

More...TreeFami		TF336492

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR032055 TMEM72

The PANTHER Classification System

More...PANTHERi		PTHR28474 PTHR28474, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF16054 TMEM72, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: A0PK05-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MQLQVFWTGL EYTCRLLGIT TAAVLIGVGT ETFLQGQFKS LAFYLLFTGA 
        60         70         80         90        100
AVSICEGAYF VAQLLAICFQ CQPGSLADRV REKAHWLGCF QKFLAYLLLS 
       110        120        130        140        150
VACFLHPVLV WHVTIPGSML IITGLAYFLL SKRKKRKAAP EVLASPEQYT 
       160        170        180        190        200
DPSSSAVSTT GSGDTEQTYT FHGALKEGPS SLFIHMKSIL KGTKKPSALQ 
       210        220        230        240        250
PPNTLMELSL EPADSLAKKK QVHFEDNLVR IVPSLAEGLD DGDSEPEETT 
       260        270 
SDTTPIIPPP QAPLFLSSLT ATGLF
Length:275
Mass (Da):29,891
Last modified:January 9, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i37F5996499CA8F65
GO
Isoform 2 (identifier: A0PK05-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-118: Missing.

Note: No experimental confirmation available.
Show »
Length:157
Mass (Da):16,870
Checksum:iADD507A7DA873754
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0313431 – 118Missing in isoform 2. 1 PublicationAdd BLAST118

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AL353801 Genomic DNA No translation available.
AB235418 mRNA Translation: BAF97794.1
BC127789 mRNA Translation: AAI27790.1
BC127790 mRNA Translation: AAI27791.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS41504.1 [A0PK05-1]
CCDS86085.1 [A0PK05-2]

NCBI Reference Sequences

More...RefSeqi		NP_001116848.1, NM_001123376.2 [A0PK05-1]
NP_001332855.1, NM_001345926.1 [A0PK05-2]
XP_011538371.1, XM_011540069.2 [A0PK05-2]
XP_011538373.1, XM_011540071.2 [A0PK05-2]

UniGene gene-oriented nucleotide sequence clusters

More...UniGenei		Hs.292788

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000389583; ENSP00000374234; ENSG00000187783 [A0PK05-1]
ENST00000544540; ENSP00000439911; ENSG00000187783 [A0PK05-2]

Database of genes from NCBI RefSeq genomes

More...GeneIDi		643236

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:643236

UCSC genome browser

More...UCSCi		uc001jbn.3 human [A0PK05-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL353801 Genomic DNA No translation available.
AB235418 mRNA Translation: BAF97794.1
BC127789 mRNA Translation: AAI27790.1
BC127790 mRNA Translation: AAI27791.1
CCDSiCCDS41504.1 [A0PK05-1]
CCDS86085.1 [A0PK05-2]
RefSeqiNP_001116848.1, NM_001123376.2 [A0PK05-1]
NP_001332855.1, NM_001345926.1 [A0PK05-2]
XP_011538371.1, XM_011540069.2 [A0PK05-2]
XP_011538373.1, XM_011540071.2 [A0PK05-2]
UniGeneiHs.292788

3D structure databases

ProteinModelPortaliA0PK05
SMRiA0PK05
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA0PK05, 8 interactors
STRINGi9606.ENSP00000374234

PTM databases

iPTMnetiA0PK05
PhosphoSitePlusiA0PK05

Polymorphism and mutation databases

BioMutaiTMEM72

Proteomic databases

jPOSTiA0PK05
PaxDbiA0PK05
PRIDEiA0PK05
ProteomicsDBi78
79 [A0PK05-2]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000389583; ENSP00000374234; ENSG00000187783 [A0PK05-1]
ENST00000544540; ENSP00000439911; ENSG00000187783 [A0PK05-2]
GeneIDi643236
KEGGihsa:643236
UCSCiuc001jbn.3 human [A0PK05-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		643236
EuPathDBiHostDB:ENSG00000187783.11

GeneCards: human genes, protein and diseases

More...GeneCardsi		TMEM72
HGNCiHGNC:31658 TMEM72
HPAiHPA039894
HPA062907
neXtProtiNX_A0PK05
OpenTargetsiENSG00000187783
PharmGKBiPA164726549

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiENOG410IGB3 Eukaryota
ENOG410XXDG LUCA
GeneTreeiENSGT00390000006888
HOGENOMiHOG000139671
HOVERGENiHBG094935
InParanoidiA0PK05
OMAiAPPEQYT
OrthoDBi1128211at2759
PhylomeDBiA0PK05
TreeFamiTF336492

Miscellaneous databases

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		643236

Protein Ontology

More...PROi		PR:A0PK05

Gene expression databases

BgeeiENSG00000187783 Expressed in 133 organ(s), highest expression level in adult mammalian kidney
GenevisibleiA0PK05 HS

Family and domain databases

InterProiView protein in InterPro
IPR032055 TMEM72
PANTHERiPTHR28474 PTHR28474, 1 hit
PfamiView protein in Pfam
PF16054 TMEM72, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTMM72_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0PK05
Secondary accession number(s): A1L181, Q5T740
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: January 9, 2007
Last modified: February 13, 2019
This is version 86 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
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