Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 53 (26 Feb 2020)
Sequence version 1 (09 Jan 2007)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein

RNA-directed RNA polymerase L

Gene

L

Organism
Bear Canyon mammarenavirus (isolate Mouse/United States/AV A0070039/2000) (BCNV)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

RNA-dependent RNA polymerase which is responsible for replication and transcription of the viral RNA genome. During transcription, synthesizes 4 subgenomic RNAs, and assures their capping by a cap-snatching mechanism, in which cellular capped pre-mRNAs are used to generate primers for viral transcription. The 3'-end of subgenomic mRNAs molecules are heterogeneous and not polyadenylated. The replicase function is to direct synthesis of antigenomic and genomic RNA which are encapsidated and non capped. As a consequence of the use of the same enzyme for both transcription and replication, these mechanisms need to be well coordinated. These processes may be regulated by proteins N and Z in a dose-dependent manner.UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase, Nucleotidyltransferase, RNA-directed RNA polymerase, Transferase
Biological processCap snatching, Viral RNA replication
LigandNucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
RNA-directed RNA polymerase LUniRule annotation (EC:2.7.7.48UniRule annotation, EC:3.1.-.-UniRule annotation)
Short name:
Protein LUniRule annotation
Alternative name(s):
Large structural proteinUniRule annotation
ReplicaseUniRule annotation
TranscriptaseUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBear Canyon mammarenavirus (isolate Mouse/United States/AV A0070039/2000) (BCNV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri192848 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaNegarnaviricotaPolyploviricotinaEllioviricetesBunyaviralesArenaviridaeMammarenavirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiPeromyscus californicus (California mouse) [TaxID: 42520]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000172257 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Host cytoplasm, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003616331 – 2216RNA-directed RNA polymerase LAdd BLAST2216

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
A0PJ24

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homomultimerizes; the oligomeric structure is essential for the polymerase activity.

Interacts with the nucleocapsid protein N.

Interacts with protein Z; this interaction inhibits viral transcription and replication.

UniRule annotation

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A0PJ24

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1167 – 1364RdRp catalyticUniRule annotationAdd BLAST198

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The N-terminal domain contains an RNA endonuclease activity that plays an essential role in mRNA transcription. This activity may be involved in cap snatching.UniRule annotation

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the arenaviridae RNA polymerase family.UniRule annotation

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
90at10239

Family and domain databases

HAMAP database of protein families

More...
HAMAPi
MF_04086 ARENA_L, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026382 CapSnatchArena
IPR007099 RNA-dir_pol_NSvirus
IPR010453 RNA_pol_arenavir

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06317 Arena_RNA_pol, 1 hit
PF17296 ArenaCapSnatch, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF000836 L_ArenaV, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50525 RDRP_SSRNA_NEG_SEG, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0PJ24-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSEYLDELKE LIRKWIPDEE MYIEQKTSFL SQVNLRSVVI EGLKLLSIII
60 70 80 90 100
EIDSCKKHGC VHNKNKTVNQ ILRDHRIVGP TLPDVVPDGY RVIGSTIILL
110 120 130 140 150
EAFVRVSHES FEIKYKSDFE KLMQLSKDLS RCGLTLIPVV DGRSNYYTEH
160 170 180 190 200
FPDWTIERMR WLILKITNFL RDNGEEIEEL EYSRLVYSLS NMENKNLGLE
210 220 230 240 250
SLKILKEEGL DYKAKLMSVM RDGVNSNMSA SECRVEMAKI YDQFSFLRKN
260 270 280 290 300
GLYKDVYCKT SRTEIINWLK DHKLILLSGE TRTAMLDERQ CGYCRNHMFR
310 320 330 340 350
ILASLIKNKR HYQSLTNPKK CGSIQSHKKL LSDCNKIKGL KVLNTRRFTL
360 370 380 390 400
LCLDVIILNS LLELIDAGEI DNEFLVNNHF KSVNDRLVSI DLIIDRLNKK
410 420 430 440 450
LMSKPNWIGS VKYKMKRTLE IHGLYYVSKW LKQVDIDSWY EFKMMREHSD
460 470 480 490 500
KCVKPTLKYK KDAARKCGQP EFGSSTILDD EVFLEYLEAL STLSLGLVNS
510 520 530 540 550
MKTSSAAKFL INDKSNYFGT VQCNECYFQD LDKSYNSLLI YQKTGERSRC
560 570 580 590 600
YGLMFKSEQF ENVYEVGESF YADPKRFFLP IMSSEVILKM CVEMLSWLDW
610 620 630 640 650
LSEQELKAFK SKLYTLIINI LTVPSKRVQV YLQGFRYLIM AFVNELHFKE
660 670 680 690 700
LQNKLKVQPL TISECYVFTL MDDLVHLLLT EAQEENMSKV FRFVLNLSYL
710 720 730 740 750
CHLVTKETPD RLTDQIKCFE KFLEPKVDFN SVFVNLDSSP HLSGEVEEKF
760 770 780 790 800
IKDLNRLFSK DLGVEDLKDP GISKELISLC ASCFNCGLLP MSKVLKHDPQ
810 820 830 840 850
SPSFTSTALD ISSNKSVVVP KLDEVGETVT QYDYQSLLSS TVVDMAQSFK
860 870 880 890 900
DKLKYKLDRK SIQFAIFKRL TNMVLKRKTD HDVKDDLDDE LSEIVDDDTL
910 920 930 940 950
RVINDVEANV SECLSKMGKI SRAATVGGQN NLGRFEKIDT LKRLWDRESM
960 970 980 990 1000
NFILMETSLH EVKDFDPSIF PIEKYKSMCE LVYDSKMKSE FFTDEVLKFC
1010 1020 1030 1040 1050
PLDLLVKNLA TKCYLEEDFF ECFKYILISA GFDNRVGRYD HRSRSRLGFK
1060 1070 1080 1090 1100
DEAILIKENS RISSRESNSE AISRRLDKSF FTNSSLRNLC FYSEESPTYR
1110 1120 1130 1140 1150
STVSSSVGKL KFGLSYKEQV GSNRELYVGD LNTKLTSRLI EDYFESLTSE
1160 1170 1180 1190 1200
CKFSCLNNDA EFERALLDMK CVVRLSGLAV SMDHSKWGPY MSPAIFNILF
1210 1220 1230 1240 1250
SNLNLELNDG VFIDKAPIEN LLNWHLHKIV EVPYNVIDAY LKGYTKRRLG
1260 1270 1280 1290 1300
LMDRSSTSIT EDFIFNWFAK GVVPSHISSV LDMGQGILHN TSDYYGLLTE
1310 1320 1330 1340 1350
QFILQCLDFI FDIKSTAYTS SDDEILLSNS PSLKKVDEDS LDINKCQEVL
1360 1370 1380 1390 1400
EFHNYLSSKF NKFVSPKTVA GSFASEFKSR FFIWSQEVPL LTKFVAAALH
1410 1420 1430 1440 1450
NVKAKSPHQL AETVDTILDQ CIANGVSIEV VKAISRRTNK LITYSGHPKN
1460 1470 1480 1490 1500
PFLCVENTDL KDWVDGSRGY RLQRSVESLF NDDDLPLTIR NSCRSLFHRI
1510 1520 1530 1540 1550
RSGDIQEEFL INALQTSPDE CLAKMLRLSD VDESTIDKVL EFRWLNLRAH
1560 1570 1580 1590 1600
GDLRLVLRTK VMSGTRILDR EEVPSLVKSV QSKLSKNFVR GAKKIITDAI
1610 1620 1630 1640 1650
NKSAFQSSIC SGFIGFCKSM GSKCVRDGNG SFQYIKHFLK SIILHSHCEV
1660 1670 1680 1690 1700
CKPEMSVFCR AALEELKPFS RPIFWDYFSL TFSNACELGN WVFSNVTIPK
1710 1720 1730 1740 1750
RTPTTVNPNF FWPVKPGSHT ELEDKVNMNH VLYSIKRNFP DLFDEHIAPF
1760 1770 1780 1790 1800
LSDLNSLKIS WIQRIKFLDL CVAMDMSSEC LGIISHIMRR KREELYIVKQ
1810 1820 1830 1840 1850
NELSVAHMRD SSPMEAGYQL NSSEICHNFL CQLVFESMLH PVLLTTGQFK
1860 1870 1880 1890 1900
KYFWFGEVEL LPNEADHDLG QLTQFVMDCK TLNISRCMSL DDLDVGYVHS
1910 1920 1930 1940 1950
SILMGDIYVN FSSFLHLLDW ENRRNYKTFD EIILCSREDT IPMEIDFTIS
1960 1970 1980 1990 2000
HSRKSFKFKY ERKTNYHIKS KVLVQKVDIE EAQNQGFDIL ELEVHEIECF
2010 2020 2030 2040 2050
VSGSQGNHIS LDGVGLIPLH PLFSGKEFLD VNKLLIKQDE NFESTHSVFS
2060 2070 2080 2090 2100
KVKLNFSNHT KDLKNKYSYK LQGPEYNMNP LHLYRGQIME NNFVISRLDV
2110 2120 2130 2140 2150
QITSRSVFLA LEALESEDRI PFLISLHIYT RSNNKKENSC FIRMTQSDLC
2160 2170 2180 2190 2200
LLIDSYEKEF TEVLKSLSDW MDFGDFALCF SNNLNCIMIA DPDGQFKLKG
2210
RQCRKVSSAS APLEID
Length:2,216
Mass (Da):255,780
Last modified:January 9, 2007 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i50A106A262B03068
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY924390 Genomic RNA Translation: AAX99344.1

NCBI Reference Sequences

More...
RefSeqi
YP_001649225.1, NC_010255.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
5848382

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:5848382

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY924390 Genomic RNA Translation: AAX99344.1
RefSeqiYP_001649225.1, NC_010255.1

3D structure databases

SMRiA0PJ24
ModBaseiSearch...

Proteomic databases

PRIDEiA0PJ24

Genome annotation databases

GeneIDi5848382
KEGGivg:5848382

Phylogenomic databases

OrthoDBi90at10239

Family and domain databases

HAMAPiMF_04086 ARENA_L, 1 hit
InterProiView protein in InterPro
IPR026382 CapSnatchArena
IPR007099 RNA-dir_pol_NSvirus
IPR010453 RNA_pol_arenavir
PfamiView protein in Pfam
PF06317 Arena_RNA_pol, 1 hit
PF17296 ArenaCapSnatch, 1 hit
PIRSFiPIRSF000836 L_ArenaV, 1 hit
PROSITEiView protein in PROSITE
PS50525 RDRP_SSRNA_NEG_SEG, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiL_BCNVU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0PJ24
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 9, 2007
Last modified: February 26, 2020
This is version 53 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again