UniProtKB - A0PJ16 (A0PJ16_ARTVU)
Protein
Pectate lyase
Gene
N/A
Organism
Artemisia vulgaris (Mugwort)
Status
Functioni
Catalytic activityi
- Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotationARBA annotation EC:4.2.2.2
Cofactori
Ca2+UniRule annotationNote: Binds 1 Ca2+ ion. Required for its activity.UniRule annotation
: pectin degradation Pathwayi
This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.UniRule annotationARBA annotationProteins known to be involved in the 5 steps of the subpathway in this organism are:
- no protein annotated in this organism
- Pectate lyase
- no protein annotated in this organism
- no protein annotated in this organism
- no protein annotated in this organism
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.
GO - Molecular functioni
- metal ion binding Source: UniProtKB-KW
- pectate lyase activity Source: UniProtKB-EC
GO - Biological processi
- pectin catabolic process Source: UniProtKB-UniPathway
Keywordsi
Molecular function | LyaseUniRule annotationARBA annotation |
Ligand | CalciumUniRule annotationARBA annotation, Metal-bindingUniRule annotationARBA annotation |
Enzyme and pathway databases
UniPathwayi | UPA00545;UER00824 |
Names & Taxonomyi
Protein namesi | Recommended name: Pectate lyaseUniRule annotationARBA annotation (EC:4.2.2.2UniRule annotationARBA annotation) |
Organismi | Artemisia vulgaris (Mugwort)Imported |
Taxonomic identifieri | 4220 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › asterids › campanulids › Asterales › Asteraceae › Asteroideae › Anthemideae › Artemisiinae › Artemisia |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 21 | UniRule annotationAdd BLAST | 21 | |
ChainiPRO_5005120900 | 22 – 396 | Pectate lyaseUniRule annotationAdd BLAST | 375 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 122 – 318 | Amb_allInterPro annotationAdd BLAST | 197 |
Sequence similaritiesi
Belongs to the polysaccharide lyase 1 family.UniRule annotation
Keywords - Domaini
SignalUniRule annotationFamily and domain databases
Gene3Di | 2.160.20.10, 1 hit |
InterProi | View protein in InterPro IPR018082, AmbAllergen IPR002022, Pec_lyase IPR012334, Pectin_lyas_fold IPR011050, Pectin_lyase_fold/virulence |
Pfami | View protein in Pfam PF00544, Pectate_lyase_4, 1 hit |
PRINTSi | PR00807, AMBALLERGEN |
SMARTi | View protein in SMART SM00656, Amb_all, 1 hit |
SUPFAMi | SSF51126, SSF51126, 1 hit |
i Sequence
Sequence statusi: Complete.
A0PJ16-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEKHYFVILF TAAFVFVGAA ARADIGDELE AAQFNSTRRG LHECAAHNII
60 70 80 90 100
DKCWRCKADW EKNRQALAKC AQGFAKGTTG GLGGEIYVVT DCSDDNAANP
110 120 130 140 150
KPGTLRCGVT QDKPLWIIFK KDMVIKLKHE LVINKDKTID GRGANVEITC
160 170 180 190 200
GGLTIHNVCN VIIHNIHIHD IKVTEGGIIK ATDAKPGHRH KSDGDGICVA
210 220 230 240 250
GSSKIWIDHC TLSHGPDGLI DVTLGSTAVT ISNCKFSHHQ KILLLGADNS
260 270 280 290 300
HVDDKKMHVT VAFNRFAEAC DQRMPRCRFG FFQVVNNDYT SWGTYAIGGS
310 320 330 340 350
ANPTILSQGN RFHAPNDPMK KNVLVRADAP HTESMKWNWR SEKDLLENGA
360 370 380 390
IFVASGCDPH LTPEQKSHLI PAEPGSAVLQ LTSCAGTLKC VPGKPC
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY904433 mRNA Translation: AAX85388.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY904433 mRNA Translation: AAX85388.1 |
3D structure databases
SMRi | A0PJ16 |
ModBasei | Search... |
Protein family/group databases
Allergomei | 2535, Art v 6 3106, Art v 6.0101 |
Enzyme and pathway databases
UniPathwayi | UPA00545;UER00824 |
Family and domain databases
Gene3Di | 2.160.20.10, 1 hit |
InterProi | View protein in InterPro IPR018082, AmbAllergen IPR002022, Pec_lyase IPR012334, Pectin_lyas_fold IPR011050, Pectin_lyase_fold/virulence |
Pfami | View protein in Pfam PF00544, Pectate_lyase_4, 1 hit |
PRINTSi | PR00807, AMBALLERGEN |
SMARTi | View protein in SMART SM00656, Amb_all, 1 hit |
SUPFAMi | SSF51126, SSF51126, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A0PJ16_ARTVU | |
Accessioni | A0PJ16Primary (citable) accession number: A0PJ16 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | January 9, 2007 |
Last sequence update: | January 9, 2007 | |
Last modified: | October 7, 2020 | |
This is version 39 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |