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Protein

BICD family-like cargo adapter 1

Gene

Bicdl1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of secretory vesicle machinery in developing neurons that acts as a regulator of neurite outgrowth. Regulates the secretory vesicle transport by controlling the accumulation of Rab6-containing secretory vesicles in the pericentrosomal region restricting anterograde secretory transport during the early phase of neuronal differentiation, thereby inhibiting neuritogenesis.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • dynactin binding Source: UniProtKB
  • Rab GTPase binding Source: UniProtKB

GO - Biological processi

  • Golgi to secretory granule transport Source: UniProtKB
  • neuron projection development Source: UniProtKB

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processNeurogenesis, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
BICD family-like cargo adapter 1
Alternative name(s):
Bicaudal D-related protein 1
Short name:
BICD-related protein 1
Short name:
BICDR-1
Coiled-coil domain-containing protein 64A
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Bicdl1
Synonyms:Bicdr1, Ccdc64
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1922915 Bicdl1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi512K → M: Abolishes Rab6-binding. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003028591 – 577BICD family-like cargo adapter 1Add BLAST577

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
A0JNT9

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
A0JNT9

PRoteomics IDEntifications database

More...
PRIDEi
A0JNT9

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
A0JNT9

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
A0JNT9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Highly expressed during early embryonic development. Predominantly expressed in kidney, undifferentiated neural tissue and developing eye.1 Publication

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Predominately expressed in early developing neurons before the stage of neurite outgrowth and elongation. Then, expression strongly declines during neuronal development.

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000041609 Expressed in 193 organ(s), highest expression level in brain

CleanEx database of gene expression profiles

More...
CleanExi
MM_CCDC64

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
A0JNT9 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
A0JNT9 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with KIF1C. Interacts with RAB6A and RAB6B; interaction is specific to Rab6.1 Publication

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
217656, 8 interactors

Protein interaction database and analysis system

More...
IntActi
A0JNT9, 18 interactors

Molecular INTeraction database

More...
MINTi
A0JNT9

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000053547

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1577
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
A0JNT9

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili121 – 379Sequence analysisAdd BLAST259
Coiled coili443 – 528Sequence analysisAdd BLAST86

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi90 – 96Poly-Pro7

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the BICDR family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IHTB Eukaryota
ENOG410ZH4K LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000157442

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000015285

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG097778

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A0JNT9

KEGG Orthology (KO)

More...
KOi
K16756

Identification of Orthologs from Complete Genome Data

More...
OMAi
ETGKPNH

Database of Orthologous Groups

More...
OrthoDBi
EOG091G0GHR

Database for complete collections of gene phylogenies

More...
PhylomeDBi
A0JNT9

TreeFam database of animal gene trees

More...
TreeFami
TF326671

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006933 HAP1_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04849 HAP1_N, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 4 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: A0JNT9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSAFCLGLAG RASAPAEPDS ACCMELPAGA GDAVRSPATA AALVSFPGGP
60 70 80 90 100
GELELALEEE LALLAAGERS SEPGEHPQAE PESPVEGHGP PLPPPPTQDP
110 120 130 140 150
ELLSVIRQKE KDLVLAARLG KALLERNQDM SRQYEQMHKE LTDKLEHLEQ
160 170 180 190 200
EKHELRRRFE NREGEWEGRV SELETDVKQL QDELERQQLH LREADREKTR
210 220 230 240 250
AVQELSEQNQ RLLDQLSRAS EVERQLSMQV HALKEDFREK NSSTNQHIIR
260 270 280 290 300
LESLQAEIKM LSDRKRELEH RLSATLEEND LLQGTVEELQ DRVLILERQG
310 320 330 340 350
HDKDLQLHQS QLELQEVRLS YRQLQGKVEE LTEERSLQSS AATSTSLLSE
360 370 380 390 400
IEQSMEAEEL EQEREQLRLQ LWEAYCQVRY LCSHLRGNDS ADSAVSTDSS
410 420 430 440 450
MDESSETSSA KDVPAGSLRT ALNDLKRLIQ SIVDGVEPTV TLLSVEMTAL
460 470 480 490 500
KEERDRLRVT SEDKEPKEQL QKAIRDRDEA IAKKNAVELE LAKCKMDMMS
510 520 530 540 550
LNSQLLDAIQ QKLNLSQQLE AWQDDMHRVI DRQLMDTHLK EQSRPAAAAF
560 570
PRGHGVGRGQ EPSTADGKRL FSFFRKI
Length:577
Mass (Da):65,287
Last modified:December 12, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDD6326D93D663D07
GO
Isoform 2 (identifier: A0JNT9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-227: Missing.
     307-577: LHQSQLELQE...KRLFSFFRKI → ESQVHASGSV...KGHSAPYRSV

Note: No experimental confirmation available.
Show »
Length:120
Mass (Da):13,714
Checksum:i98C6D2B70EEB3BBC
GO
Isoform 3 (identifier: A0JNT9-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-240: Missing.
     241-257: NSSTNQHIIRLESLQAE → MLSQLNSTPSCGSPSFQ
     440-509: VTLLSVEMTA...SLNSQLLDAI → STRRMDDDSL...RGLYLMRPPV
     510-577: Missing.

Note: No experimental confirmation available.
Show »
Length:269
Mass (Da):30,608
Checksum:i3CA05BD7391CBD92
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
D6RJL4D6RJL4_MOUSE
BICD family-like cargo adapter 1
Bicdl1 Ccdc64
44Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6RQR3F6RQR3_MOUSE
BICD family-like cargo adapter 1
Bicdl1 Ccdc64
235Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6R5X6F6R5X6_MOUSE
BICD family-like cargo adapter 1
Bicdl1 Ccdc64
302Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
D3YTR9D3YTR9_MOUSE
BICD family-like cargo adapter 1
Bicdl1 Ccdc64
82Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti124L → S in AAH24804 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0279701 – 240Missing in isoform 3. 1 PublicationAdd BLAST240
Alternative sequenceiVSP_0279711 – 227Missing in isoform 2. 1 PublicationAdd BLAST227
Alternative sequenceiVSP_027972241 – 257NSSTN…SLQAE → MLSQLNSTPSCGSPSFQ in isoform 3. 1 PublicationAdd BLAST17
Alternative sequenceiVSP_027973307 – 577LHQSQ…FFRKI → ESQVHASGSVSAKPRKILGF LILSKEISCQSKGHSAPYRS V in isoform 2. 1 PublicationAdd BLAST271
Alternative sequenceiVSP_027974440 – 509VTLLS…LLDAI → STRRMDDDSLEEQIRQTSED SRALRELMEGERGKLRQSLE ELQQLHSQVSTPVSQCRECA RGLYLMRPPV in isoform 3. 1 PublicationAdd BLAST70
Alternative sequenceiVSP_027975510 – 577Missing in isoform 3. 1 PublicationAdd BLAST68

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AK036757 mRNA Translation: BAC29565.1
AK041990 mRNA Translation: BAC31124.1
BC024804 mRNA Translation: AAH24804.1
BC126948 mRNA Translation: AAI26949.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS39230.1 [A0JNT9-1]

NCBI Reference Sequences

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RefSeqi
NP_001074277.1, NM_001080808.1 [A0JNT9-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Mm.233914

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000055408; ENSMUSP00000053547; ENSMUSG00000041609 [A0JNT9-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
75665

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:75665

UCSC genome browser

More...
UCSCi
uc008zel.1 mouse [A0JNT9-1]
uc008zem.1 mouse [A0JNT9-3]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK036757 mRNA Translation: BAC29565.1
AK041990 mRNA Translation: BAC31124.1
BC024804 mRNA Translation: AAH24804.1
BC126948 mRNA Translation: AAI26949.1
CCDSiCCDS39230.1 [A0JNT9-1]
RefSeqiNP_001074277.1, NM_001080808.1 [A0JNT9-1]
UniGeneiMm.233914

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
6F1Telectron microscopy3.50X/x1-325[»]
6F1Uelectron microscopy3.40X/x1-577[»]
SMRiA0JNT9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi217656, 8 interactors
IntActiA0JNT9, 18 interactors
MINTiA0JNT9
STRINGi10090.ENSMUSP00000053547

PTM databases

iPTMnetiA0JNT9
PhosphoSitePlusiA0JNT9

Proteomic databases

EPDiA0JNT9
PaxDbiA0JNT9
PRIDEiA0JNT9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000055408; ENSMUSP00000053547; ENSMUSG00000041609 [A0JNT9-1]
GeneIDi75665
KEGGimmu:75665
UCSCiuc008zel.1 mouse [A0JNT9-1]
uc008zem.1 mouse [A0JNT9-3]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
92558
MGIiMGI:1922915 Bicdl1

Phylogenomic databases

eggNOGiENOG410IHTB Eukaryota
ENOG410ZH4K LUCA
GeneTreeiENSGT00940000157442
HOGENOMiHOG000015285
HOVERGENiHBG097778
InParanoidiA0JNT9
KOiK16756
OMAiETGKPNH
OrthoDBiEOG091G0GHR
PhylomeDBiA0JNT9
TreeFamiTF326671

Miscellaneous databases

Protein Ontology

More...
PROi
PR:A0JNT9

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000041609 Expressed in 193 organ(s), highest expression level in brain
CleanExiMM_CCDC64
ExpressionAtlasiA0JNT9 baseline and differential
GenevisibleiA0JNT9 MM

Family and domain databases

InterProiView protein in InterPro
IPR006933 HAP1_N
PfamiView protein in Pfam
PF04849 HAP1_N, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiBICL1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0JNT9
Secondary accession number(s): Q8C9J5, Q8CB56, Q8R1D2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: December 12, 2006
Last modified: December 5, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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