UniProtKB - A0FK65 (A0FK65_MEDTR)
Protein
Submitted name:
PHD5
Gene
N/A
Organism
Medicago truncatula (Barrel medic) (Medicago tribuloides)
Status
Functioni
GO - Molecular functioni
- histone binding Source: InterPro
- metal ion binding Source: UniProtKB-KW
GO - Biological processi
- regulation of transcription, DNA-templated Source: InterPro
Keywordsi
Biological process | Transcription, Transcription regulationARBA annotation |
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Submitted name: PHD5Imported |
Organismi | Medicago truncatula (Barrel medic) (Medicago tribuloides)Imported |
Taxonomic identifieri | 3880 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › fabids › Fabales › Fabaceae › Papilionoideae › 50 kb inversion clade › NPAAA clade › Hologalegina › IRL clade › Trifolieae › Medicago |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 196 – 248 | PHD-typeInterPro annotationAdd BLAST | 53 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 142 – 194 | DisorderedSequence analysisAdd BLAST | 53 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 142 – 173 | PolarSequence analysisAdd BLAST | 32 |
Sequence similaritiesi
Belongs to the Alfin family.ARBA annotation
Keywords - Domaini
Zinc-fingerPROSITE-ProRule annotationARBA annotationFamily and domain databases
CDDi | cd15613, PHD_AL_plant, 1 hit |
Gene3Di | 3.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR021998, Alfin IPR044104, PHD_AL_plant IPR019786, Zinc_finger_PHD-type_CS IPR011011, Znf_FYVE_PHD IPR001965, Znf_PHD IPR019787, Znf_PHD-finger IPR013083, Znf_RING/FYVE/PHD |
Pfami | View protein in Pfam PF12165, Alfin, 1 hit PF00628, PHD, 1 hit |
SMARTi | View protein in SMART SM00249, PHD, 1 hit |
SUPFAMi | SSF57903, SSF57903, 1 hit |
PROSITEi | View protein in PROSITE PS01359, ZF_PHD_1, 1 hit PS50016, ZF_PHD_2, 1 hit |
i Sequence
Sequence statusi: Complete.
A0FK65-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAQHPVPRTV EEVFSDYKGR RAGLIKALTT DVEKFYQLCD PEKENLCLYG
60 70 80 90 100
FPNETWEVNL PVEEVPPELP EPALGINFAR DGMQEKDWLS LVAVHSDSWL
110 120 130 140 150
LAVAFYFGAR FGFGKNDRKR LFQMINDLPT VFELATGTAK QSKDQLTAHN
160 170 180 190 200
NGSNSKYKSS GKSRQSESQT KGVKMSAPVK EEVDSGEEEE DDDEQGATCG
210 220 230 240 250
ACGDNYGXDE FWICCDMCEK WFHGKCVKIT PAKAEHIKQY KCPGCSIKAK
260
NWIALNVWTI SGQD
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | EF025128 mRNA Translation: ABJ99762.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | EF025128 mRNA Translation: ABJ99762.1 |
3D structure databases
ModBasei | Search... |
PTM databases
iPTMneti | A0FK65 |
Family and domain databases
CDDi | cd15613, PHD_AL_plant, 1 hit |
Gene3Di | 3.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR021998, Alfin IPR044104, PHD_AL_plant IPR019786, Zinc_finger_PHD-type_CS IPR011011, Znf_FYVE_PHD IPR001965, Znf_PHD IPR019787, Znf_PHD-finger IPR013083, Znf_RING/FYVE/PHD |
Pfami | View protein in Pfam PF12165, Alfin, 1 hit PF00628, PHD, 1 hit |
SMARTi | View protein in SMART SM00249, PHD, 1 hit |
SUPFAMi | SSF57903, SSF57903, 1 hit |
PROSITEi | View protein in PROSITE PS01359, ZF_PHD_1, 1 hit PS50016, ZF_PHD_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A0FK65_MEDTR | |
Accessioni | A0FK65Primary (citable) accession number: A0FK65 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 28, 2006 |
Last sequence update: | November 28, 2006 | |
Last modified: | December 2, 2020 | |
This is version 54 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |