UniProtKB - A0AJT1 (RPOZ_LISW6)
Protein
DNA-directed RNA polymerase subunit omega
Gene
rpoZ
Organism
Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)
Status
Functioni
Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.UniRule annotation
Catalytic activityi
- EC:2.7.7.6UniRule annotation
GO - Molecular functioni
- DNA binding Source: UniProtKB-UniRule
- DNA-directed 5'-3' RNA polymerase activity Source: UniProtKB-UniRule
GO - Biological processi
- transcription, DNA-templated Source: UniProtKB-UniRule
Keywordsi
Molecular function | Nucleotidyltransferase, Transferase |
Biological process | Transcription |
Enzyme and pathway databases
BioCyci | LWEL386043:G1GJF-1903-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: DNA-directed RNA polymerase subunit omegaUniRule annotation (EC:2.7.7.6UniRule annotation)Short name: RNAP omega subunitUniRule annotation Alternative name(s): RNA polymerase omega subunitUniRule annotation Transcriptase subunit omegaUniRule annotation |
Gene namesi | Name:rpoZUniRule annotation Ordered Locus Names:lwe1845 |
Organismi | Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8) |
Taxonomic identifieri | 386043 [NCBI] |
Taxonomic lineagei | Bacteria › Firmicutes › Bacilli › Bacillales › Listeriaceae › Listeria › |
Proteomesi |
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PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_1000005951 | 1 – 67 | DNA-directed RNA polymerase subunit omegaAdd BLAST | 67 |
Interactioni
Subunit structurei
The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
UniRule annotationProtein-protein interaction databases
STRINGi | 386043.lwe1845 |
Family & Domainsi
Sequence similaritiesi
Belongs to the RNA polymerase subunit omega family.UniRule annotation
Phylogenomic databases
eggNOGi | COG1758, Bacteria |
HOGENOMi | CLU_125406_6_0_9 |
OMAi | KYTIVTV |
Family and domain databases
Gene3Di | 3.90.940.10, 1 hit |
HAMAPi | MF_00366, RNApol_bact_RpoZ, 1 hit |
InterProi | View protein in InterPro IPR003716, DNA-dir_RNA_pol_omega IPR006110, Pol_omega/K/RPB6 IPR012293, RNAP_RPB6_omega IPR036161, RPB6/omega-like_sf |
PANTHERi | PTHR34476, PTHR34476, 1 hit |
Pfami | View protein in Pfam PF01192, RNA_pol_Rpb6, 1 hit |
SMARTi | View protein in SMART SM01409, RNA_pol_Rpb6, 1 hit |
SUPFAMi | SSF63562, SSF63562, 1 hit |
TIGRFAMsi | TIGR00690, rpoZ, 1 hit |
i Sequence
Sequence statusi: Complete.
A0AJT1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MLYPSIDNLL LKIDSKYSLV TVAAKRARYM QLENDKGVLP SYQSDKFVGK
60
ALEEIHAGKL VLKNDEK
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AM263198 Genomic DNA Translation: CAK21263.1 |
Genome annotation databases
EnsemblBacteriai | CAK21263; CAK21263; lwe1845 |
KEGGi | lwe:lwe1845 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AM263198 Genomic DNA Translation: CAK21263.1 |
3D structure databases
SMRi | A0AJT1 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 386043.lwe1845 |
Genome annotation databases
EnsemblBacteriai | CAK21263; CAK21263; lwe1845 |
KEGGi | lwe:lwe1845 |
Phylogenomic databases
eggNOGi | COG1758, Bacteria |
HOGENOMi | CLU_125406_6_0_9 |
OMAi | KYTIVTV |
Enzyme and pathway databases
BioCyci | LWEL386043:G1GJF-1903-MONOMER |
Family and domain databases
Gene3Di | 3.90.940.10, 1 hit |
HAMAPi | MF_00366, RNApol_bact_RpoZ, 1 hit |
InterProi | View protein in InterPro IPR003716, DNA-dir_RNA_pol_omega IPR006110, Pol_omega/K/RPB6 IPR012293, RNAP_RPB6_omega IPR036161, RPB6/omega-like_sf |
PANTHERi | PTHR34476, PTHR34476, 1 hit |
Pfami | View protein in Pfam PF01192, RNA_pol_Rpb6, 1 hit |
SMARTi | View protein in SMART SM01409, RNA_pol_Rpb6, 1 hit |
SUPFAMi | SSF63562, SSF63562, 1 hit |
TIGRFAMsi | TIGR00690, rpoZ, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | RPOZ_LISW6 | |
Accessioni | A0AJT1Primary (citable) accession number: A0AJT1 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | January 15, 2008 |
Last sequence update: | November 28, 2006 | |
Last modified: | December 2, 2020 | |
This is version 77 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |